##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547574_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2662757 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.459195112434216 31.0 31.0 33.0 30.0 34.0 2 31.885591512856788 31.0 31.0 34.0 30.0 34.0 3 32.04192797164743 33.0 31.0 34.0 30.0 34.0 4 35.76073408125488 37.0 35.0 37.0 35.0 37.0 5 35.657137696004554 37.0 35.0 37.0 33.0 37.0 6 35.69053841563462 37.0 35.0 37.0 33.0 37.0 7 36.005032378095336 37.0 35.0 37.0 35.0 37.0 8 35.95687364637479 37.0 35.0 37.0 35.0 37.0 9 37.60533837672758 39.0 37.0 39.0 35.0 39.0 10 37.220891729887484 39.0 37.0 39.0 34.0 39.0 11 36.99641386728117 39.0 37.0 39.0 33.0 39.0 12 36.51074318835703 39.0 35.0 39.0 32.0 39.0 13 36.304320296594845 39.0 35.0 39.0 32.0 39.0 14 37.0969731747959 40.0 35.0 41.0 31.0 41.0 15 37.405203704280936 40.0 35.0 41.0 32.0 41.0 16 37.539678986854604 40.0 35.0 41.0 32.0 41.0 17 37.51234491168364 40.0 35.0 41.0 33.0 41.0 18 37.45656438045229 39.0 35.0 41.0 32.0 41.0 19 37.45608780673565 39.0 35.0 41.0 32.0 41.0 20 37.346424777026215 39.0 35.0 41.0 32.0 41.0 21 37.24189702627765 39.0 35.0 41.0 32.0 41.0 22 37.24221887314539 39.0 35.0 41.0 32.0 41.0 23 37.191844017309876 39.0 35.0 41.0 32.0 41.0 24 37.13434083545739 39.0 35.0 41.0 32.0 41.0 25 37.026375670029225 39.0 35.0 41.0 32.0 41.0 26 37.07626080787695 39.0 35.0 41.0 32.0 41.0 27 37.06981297955465 39.0 35.0 41.0 32.0 41.0 28 37.03651741409374 39.0 35.0 41.0 32.0 41.0 29 36.99480951510033 39.0 35.0 41.0 32.0 41.0 30 36.904486965952955 39.0 35.0 41.0 31.0 41.0 31 36.74027183103828 39.0 35.0 41.0 31.0 41.0 32 36.69096729442454 39.0 35.0 41.0 31.0 41.0 33 36.610070689890215 39.0 35.0 41.0 30.0 41.0 34 36.50600449083412 39.0 35.0 41.0 30.0 41.0 35 36.42391851753652 39.0 35.0 41.0 30.0 41.0 36 36.35151761876882 39.0 35.0 41.0 30.0 41.0 37 36.33627927745566 39.0 35.0 41.0 30.0 41.0 38 36.18226747690458 38.0 35.0 41.0 30.0 41.0 39 36.12896219970504 38.0 35.0 41.0 30.0 41.0 40 36.050184076128616 38.0 35.0 41.0 29.0 41.0 41 35.970225597003406 38.0 35.0 40.0 29.0 41.0 42 35.99035323163173 38.0 35.0 40.0 29.0 41.0 43 35.99356043379099 38.0 35.0 40.0 29.0 41.0 44 35.91308594813571 38.0 35.0 40.0 29.0 41.0 45 35.85497662760815 38.0 35.0 40.0 29.0 41.0 46 35.8527252017364 38.0 35.0 40.0 29.0 41.0 47 35.75665334839041 38.0 34.0 40.0 29.0 41.0 48 35.65759887214642 38.0 34.0 40.0 29.0 41.0 49 35.61351411337948 38.0 34.0 40.0 28.0 41.0 50 35.53617547526868 38.0 34.0 40.0 28.0 41.0 51 35.109221382198974 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 9.0 11 7.0 12 15.0 13 15.0 14 36.0 15 90.0 16 188.0 17 366.0 18 804.0 19 1631.0 20 2743.0 21 4321.0 22 6540.0 23 9704.0 24 13980.0 25 20376.0 26 27590.0 27 33333.0 28 39292.0 29 46315.0 30 56926.0 31 71387.0 32 90951.0 33 123409.0 34 211330.0 35 254852.0 36 189394.0 37 256517.0 38 407568.0 39 792860.0 40 202.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.89276603159808 24.333050293361357 29.630754890513856 12.143428784526714 2 31.80008540020738 24.865919045560673 30.311290140256887 13.022705413975064 3 30.29247505499 24.990263850587944 30.35335180791939 14.363909286502674 4 28.898356102340543 26.825542097908293 29.507837177782275 14.768264621968886 5 24.620684501064122 31.290087679799544 28.171477908047937 15.917749911088395 6 23.157614457496496 39.86800147366057 26.225224457207325 10.749159611635609 7 87.52544824781232 3.982901932095193 6.230572297810126 2.2610775222823563 8 87.43103482593418 3.3398466326442855 6.485909153557761 2.7432093878637818 9 81.42305137119159 6.767910102198586 7.959006398255643 3.8500321283541834 10 40.80342291842628 35.75583502362401 13.496462501084402 9.94427955686531 11 33.907825610823664 22.671313980209234 26.510042035379122 16.910818373587976 12 32.28724964388414 20.49676331711831 29.174385796375713 18.041601242621837 13 28.028430682935017 24.567243650096497 29.013988133352008 18.390337533616474 14 18.276658365746478 29.512644225515132 32.49845930364656 19.712238105091828 15 17.515229515873962 29.357767156372137 36.57074227952457 16.556261048229334 16 26.060507962236134 26.707055882305447 32.07844350798815 15.153992647470272 17 25.431573365500494 26.495583337120138 26.480936863559084 21.591906433820284 18 24.910008686485476 28.226984287338276 29.402044572599 17.46096245357725 19 26.41371330541991 28.98214144212183 26.109780201497923 18.49436505096034 20 24.984705701646828 31.13494772523366 26.580157333170096 17.30018923994942 21 26.553267909914425 25.234672183755407 31.710065920397547 16.501993985932625 22 23.794172731495962 21.86602081977439 32.779558930837474 21.56024751789217 23 21.125622803733123 25.48144648572889 33.239983971500216 20.152946739037773 24 21.71016731906066 27.692050006816242 31.468699547123524 19.12908312699957 25 23.258149354221956 27.162824095476985 29.396223538234995 20.182803012066064 26 19.960777494904715 30.9456702207524 26.271041630911117 22.822510653431763 27 18.711696185570066 29.935251320342037 32.61656996864528 18.736482525442614 28 17.400235920889514 29.07640464375833 31.658089716786026 21.865269718566132 29 19.60130045663198 29.00647712126942 31.56859600782197 19.82362641427663 30 22.590157494656854 27.055191292333475 31.353142626232888 19.00150858677679 31 24.8952871028036 25.106722092928496 29.792391870531183 20.205598933736724 32 26.952515757164473 26.51436086732661 27.039042616355907 19.49408075915301 33 25.71372453438297 25.747749419117106 28.205352572540416 20.33317347395951 34 20.746466913804003 26.109855311618745 31.97129892063001 21.172378853947244 35 20.725060529368623 27.962146001306166 30.029138971374408 21.283654497950806 36 25.494515646752596 26.39778995980482 29.37436649307466 18.73332790036793 37 21.98000042812769 29.255429616746852 28.68868620005506 20.075883755070404 38 23.21943008693621 28.7343531535172 26.834405092165753 21.21181166738084 39 21.274904168874592 26.71772151946272 28.657064839187353 23.350309472475335 40 24.599541002051634 25.347412475115078 28.80923794398062 21.243808578852672 41 20.283037468308223 25.196704017677916 29.476028041612505 25.044230472401352 42 20.20556137867631 26.164573034640416 30.302577366241078 23.327288220442195 43 20.46709481939208 25.198994876363106 30.55363294510164 23.780277359143174 44 22.003096790281653 25.930342122844856 29.73767414750952 22.328886939363976 45 20.813427586520287 27.621746933723205 27.561884167424967 24.00294131233154 46 22.42833273933746 26.111019518491545 29.106523802209516 22.354123939961475 47 20.74237341221899 26.521721659167547 30.780240179633367 21.955664748980098 48 20.32784065538087 28.20332459927812 30.89673597703433 20.572098768306684 49 22.704287323251805 25.33111357889586 30.731043050492403 21.233556047359937 50 20.91170917962097 26.380852627558582 29.915009142779457 22.79242905004099 51 19.091640731767864 28.859223729390255 28.92179046003822 23.12734507880366 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1564.0 1 3415.5 2 5267.0 3 10496.0 4 15725.0 5 11318.0 6 6911.0 7 7008.5 8 7106.0 9 7361.0 10 7616.0 11 7667.5 12 7719.0 13 8120.0 14 8521.0 15 7953.5 16 7386.0 17 7420.5 18 7455.0 19 7528.0 20 7601.0 21 10136.0 22 12671.0 23 13643.5 24 14616.0 25 17059.5 26 23559.0 27 27615.0 28 35913.0 29 44211.0 30 50250.5 31 56290.0 32 68190.5 33 80091.0 34 86481.5 35 92872.0 36 103216.5 37 113561.0 38 123152.0 39 132743.0 40 138224.0 41 143705.0 42 161179.0 43 178653.0 44 189228.5 45 199804.0 46 214566.0 47 229328.0 48 233177.5 49 237027.0 50 224628.5 51 212230.0 52 192164.0 53 172098.0 54 160104.5 55 148111.0 56 142063.0 57 136015.0 58 124281.5 59 112548.0 60 96110.0 61 79672.0 62 65736.5 63 51801.0 64 44123.0 65 36445.0 66 28112.0 67 19779.0 68 16433.0 69 13087.0 70 10461.0 71 7835.0 72 5374.5 73 2914.0 74 2725.5 75 1873.0 76 1209.0 77 804.0 78 399.0 79 277.0 80 155.0 81 220.0 82 285.0 83 155.0 84 25.0 85 16.0 86 7.0 87 13.0 88 19.0 89 14.0 90 9.0 91 5.5 92 2.0 93 2.5 94 3.0 95 4.0 96 5.0 97 5.5 98 6.0 99 3.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2662757.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.897313787865802 #Duplication Level Percentage of deduplicated Percentage of total 1 74.36158194378358 11.821494019224236 2 10.498109568392266 3.3378348397625657 3 4.023466218950073 1.9188691499258188 4 1.9709909333270614 1.2533384536055512 5 1.1729143504764088 0.9323093737907138 6 0.772186403393216 0.7365413734479286 7 0.5435666878916356 0.6048875141430973 8 0.4165057594273498 0.5297058201655941 9 0.32843870611546716 0.46991638540783986 >10 3.033424382782257 10.734956714532764 >50 1.0881824218088887 12.696374270818781 >100 1.7736268832203461 51.882403490923465 >500 0.011017803659832773 1.1356799467673726 >1k 0.0055089018299163866 1.3639887029135929 >5k 4.790349417318597E-4 0.5816999445706816 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8862 0.3328129453795446 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 6415 0.240915712549061 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 3459 0.1299029539683869 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 3092 0.11612024679683501 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.7555060412947935E-5 0.0 0.0 0.06669778729339552 0.0 2 3.7555060412947935E-5 0.0 0.0 0.2441454477445745 0.0 3 3.7555060412947935E-5 0.0 0.0 0.35981503381645413 0.0 4 3.7555060412947935E-5 0.0 0.0 0.541619081275535 0.0 5 3.7555060412947935E-5 0.0 0.0 0.9641135109211993 0.0 6 3.7555060412947935E-5 0.0 0.0 1.3009072927045164 0.0 7 3.7555060412947935E-5 0.0 0.0 1.5281905183236772 0.0 8 3.7555060412947935E-5 0.0 0.0 2.0307147817093334 0.0 9 3.7555060412947935E-5 0.0 0.0 2.208650657945881 0.0 10 3.7555060412947935E-5 0.0 0.0 2.5437544620106154 0.0 11 3.7555060412947935E-5 0.0 0.0 3.079327178559666 0.0 12 3.7555060412947935E-5 0.0 0.0 3.500432070970051 0.0 13 3.7555060412947935E-5 0.0 0.0 3.6697678383720334 0.0 14 3.7555060412947935E-5 0.0 0.0 3.7503234429578067 0.0 15 3.7555060412947935E-5 0.0 0.0 3.870424526158414 0.0 16 3.7555060412947935E-5 0.0 0.0 4.116710612346527 0.0 17 3.7555060412947935E-5 0.0 0.0 4.400251318464283 0.0 18 3.7555060412947935E-5 0.0 0.0 4.724689485371741 0.0 19 3.7555060412947935E-5 0.0 0.0 4.949306301701582 0.0 20 3.7555060412947935E-5 0.0 0.0 5.201676307676593 0.0 21 3.7555060412947935E-5 0.0 0.0 5.492164699970744 0.0 22 3.7555060412947935E-5 0.0 0.0 5.826066742102265 0.0 23 3.7555060412947935E-5 0.0 0.0 6.122188393458359 0.0 24 3.7555060412947935E-5 0.0 0.0 6.346354549063245 0.0 25 3.7555060412947935E-5 0.0 0.0 6.546260135641367 0.0 26 3.7555060412947935E-5 0.0 0.0 6.749733452958719 0.0 27 3.7555060412947935E-5 0.0 0.0 7.028692441706096 0.0 28 3.7555060412947935E-5 0.0 0.0 7.258754741795816 0.0 29 3.7555060412947935E-5 0.0 0.0 7.555402163997691 0.0 30 3.7555060412947935E-5 0.0 0.0 7.913226779612259 0.0 31 3.7555060412947935E-5 0.0 0.0 8.204353607933431 0.0 32 3.7555060412947935E-5 0.0 0.0 8.449963703034111 0.0 33 3.7555060412947935E-5 0.0 0.0 8.711647363991531 0.0 34 3.7555060412947935E-5 0.0 0.0 9.017195335511277 0.0 35 3.7555060412947935E-5 0.0 0.0 9.323381743058041 0.0 36 3.7555060412947935E-5 0.0 0.0 9.59355284766879 0.0 37 3.7555060412947935E-5 0.0 0.0 9.90326943089437 0.0 38 3.7555060412947935E-5 0.0 0.0 10.283063756850513 0.0 39 3.7555060412947935E-5 0.0 0.0 11.14600393501923 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCTCG 50 2.1827873E-11 45.000004 30 ATCGACC 25 3.8921942E-5 45.000004 26 TCGCACG 20 7.034963E-4 45.0 29 ATATGCG 35 1.2127384E-7 45.0 1 ACGTCGA 35 1.2127384E-7 45.0 20 CGTCGCA 20 7.034963E-4 45.0 41 ATTCGCG 120 0.0 43.125004 1 CGGTCTA 680 0.0 42.683823 31 TTTACGG 185 0.0 42.567566 2 GCGTAAG 180 0.0 42.5 1 CGACGGT 685 0.0 42.372265 28 ACGGGAT 1165 0.0 41.90987 5 ACGGTCT 705 0.0 41.80851 30 CACGACG 705 0.0 41.48936 26 ACGTACG 115 0.0 41.08696 1 TCACGAC 725 0.0 40.965515 25 CGGGATT 1390 0.0 40.953236 6 TATCGTC 50 1.0822987E-9 40.500004 37 ATCGTAC 45 1.9299478E-8 40.0 27 CGTTAAG 45 1.9299478E-8 40.0 34 >>END_MODULE