##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547573_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3229171 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.3904110373839 31.0 31.0 33.0 30.0 34.0 2 31.80387319222178 31.0 31.0 34.0 30.0 34.0 3 31.841602689978327 31.0 31.0 34.0 30.0 34.0 4 35.64366365237394 37.0 35.0 37.0 33.0 37.0 5 35.57732712203844 37.0 35.0 37.0 33.0 37.0 6 35.618686963310395 37.0 35.0 37.0 33.0 37.0 7 35.9971961844077 37.0 35.0 37.0 35.0 37.0 8 35.961047587755495 37.0 35.0 37.0 35.0 37.0 9 37.623372376377716 39.0 37.0 39.0 35.0 39.0 10 37.172170504442164 39.0 37.0 39.0 33.0 39.0 11 36.91953352733565 39.0 37.0 39.0 32.0 39.0 12 36.763670613912986 39.0 35.0 39.0 32.0 39.0 13 36.730287123227605 39.0 35.0 39.0 33.0 39.0 14 37.83597338140346 40.0 37.0 41.0 33.0 41.0 15 37.99887091764419 40.0 37.0 41.0 33.0 41.0 16 38.02330474292009 40.0 37.0 41.0 33.0 41.0 17 37.94361617888926 40.0 36.0 41.0 33.0 41.0 18 37.79748765240367 39.0 36.0 41.0 33.0 41.0 19 37.729829110939 39.0 36.0 41.0 33.0 41.0 20 37.57660867138966 39.0 35.0 41.0 33.0 41.0 21 37.45145952320271 39.0 35.0 41.0 32.0 41.0 22 37.395262127648245 39.0 35.0 41.0 32.0 41.0 23 37.30068584166029 39.0 35.0 41.0 32.0 41.0 24 37.22475582742444 39.0 35.0 41.0 32.0 41.0 25 37.16310192306322 39.0 35.0 41.0 32.0 41.0 26 37.183334050751725 39.0 35.0 41.0 32.0 41.0 27 37.13580885001135 39.0 35.0 41.0 32.0 41.0 28 37.050193377805016 39.0 35.0 41.0 32.0 41.0 29 36.994682226490944 39.0 35.0 41.0 31.0 41.0 30 36.8754921928879 39.0 35.0 41.0 31.0 41.0 31 36.70733417338382 39.0 35.0 41.0 31.0 41.0 32 36.52032797272117 39.0 35.0 41.0 30.0 41.0 33 36.33172136130295 39.0 35.0 41.0 30.0 41.0 34 36.174479456182404 39.0 35.0 41.0 29.0 41.0 35 36.03238571137918 39.0 35.0 41.0 29.0 41.0 36 35.9698684275314 39.0 35.0 41.0 28.0 41.0 37 35.92487050081894 39.0 35.0 41.0 28.0 41.0 38 35.79661095680594 39.0 35.0 41.0 27.0 41.0 39 35.73036268441653 39.0 35.0 41.0 27.0 41.0 40 35.67270175534216 39.0 35.0 41.0 27.0 41.0 41 35.6131034869321 39.0 35.0 41.0 26.0 41.0 42 35.5834054622688 38.0 35.0 41.0 26.0 41.0 43 35.562557387019766 38.0 35.0 41.0 26.0 41.0 44 35.453713352436274 38.0 35.0 40.0 26.0 41.0 45 35.40679542830033 38.0 35.0 40.0 26.0 41.0 46 35.36896187907051 38.0 35.0 40.0 26.0 41.0 47 35.31164345276233 38.0 34.0 40.0 26.0 41.0 48 35.21179058030683 38.0 34.0 40.0 25.0 41.0 49 35.1258564504636 38.0 34.0 40.0 25.0 41.0 50 35.044973771906164 38.0 34.0 40.0 24.0 41.0 51 34.628747130455466 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 8.0 11 6.0 12 9.0 13 17.0 14 22.0 15 66.0 16 168.0 17 455.0 18 1052.0 19 2074.0 20 3549.0 21 6056.0 22 9268.0 23 14476.0 24 22228.0 25 35086.0 26 47512.0 27 53641.0 28 56885.0 29 61079.0 30 70306.0 31 84856.0 32 104470.0 33 132880.0 34 198684.0 35 266174.0 36 256158.0 37 317357.0 38 486335.0 39 997999.0 40 293.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.46618745182587 23.954878821840033 28.818975520342526 15.75995820599157 2 33.66381030920939 24.644064993770847 28.825943252927765 12.866181444091998 3 27.92326575458531 24.790325442660052 34.60309162939962 12.683317173355018 4 25.394164632346815 26.224873195008875 34.42422219201151 13.9567399806328 5 23.61974636834036 29.94211207768186 32.538134400439 13.900007153538787 6 20.944013184808114 39.11759395832553 29.24849752459687 10.689895332269488 7 84.7091714870473 3.180475732006759 10.022634292206885 2.08771848873906 8 84.74964627144243 2.8611987411010444 9.902758324040443 2.48639666341609 9 79.74213815248558 5.4597913829896285 11.580712201366852 3.2173582631579434 10 35.36511383262144 38.09107662616814 17.01653458426327 9.527274956947155 11 22.37763190614557 25.358923389315706 34.73544758081873 17.527997123719988 12 24.478449732144874 22.603231603405334 34.06796976685347 18.850348897596316 13 23.837604140505412 24.840245375670722 33.2059838268088 18.116166657015068 14 16.307776825693036 28.894598644667624 34.3070713814784 20.490553148160938 15 15.608495183438723 31.159173670270174 36.50599488227784 16.726336264013273 16 21.36845648620033 31.147127234822808 32.850443658759474 14.633972620217387 17 21.577767173060824 30.645450488685793 29.97695074060804 17.79983159764534 18 19.82257985098962 31.141707887256516 32.428818418101734 16.60689384365213 19 21.105014259077638 31.459467460843666 30.39938114147563 17.036137138603067 20 21.958824726222304 32.03540475248911 30.51473582538676 15.491034695901828 21 23.236644946953877 28.79345813523037 32.83406174525908 15.135835172556671 22 21.97183116038141 23.968597513107852 34.49439500106993 19.565176325440802 23 18.39558821753323 27.988948247088803 35.0602058546915 18.55525768068647 24 18.045993847956645 29.259305252029083 35.265831385206916 17.42886951480736 25 19.79669085347292 31.24709097164566 31.018301601246883 17.93791657363453 26 18.881812081181206 33.56929688765321 29.003759788502993 18.545131242662592 27 17.778742593687358 32.288008284479204 32.58848788125498 17.344761240578464 28 16.172200233434523 31.26935674821804 33.95091185942151 18.607531158925926 29 17.7497258584324 29.549100992174154 32.719976737063476 19.981196412329975 30 19.034513811749207 29.779655521494526 32.81473790022269 18.37109276653358 31 19.533124755548712 29.89488633460414 30.871019218245177 19.700969691601962 32 19.53931829562448 30.970487471861972 30.006401023668307 19.483793208845242 33 19.773774755192587 29.14042025027476 30.674591094742272 20.41121389979038 34 17.57314803087232 29.495650741320294 31.114611149425038 21.816590078382347 35 17.572126096759817 30.430937228161653 30.608258280530826 21.388678394547703 36 19.145533017607306 30.26779938256599 30.41864305111126 20.168024548715444 37 18.08061573698017 31.185496215592174 31.128484679194752 19.6054033682329 38 18.270602578804283 30.788707070638253 30.552423516747794 20.388266833809666 39 18.167665942745057 29.656404073986792 30.569084139551606 21.606845843716545 40 19.732835455291774 29.689539513392138 30.912980452258488 19.664644579057597 41 17.716776225229324 29.444863712699014 30.787282556420827 22.05107750565083 42 18.664573663023727 30.057404826192236 30.653161446080123 20.624860064703913 43 19.0073241708166 29.50212299069947 30.78384514167878 20.706707696805154 44 19.084991163366695 29.720693019973236 30.66164659598392 20.53266922067614 45 19.01732673803896 29.939727564752687 29.301328421443152 21.741617275765204 46 19.676226498999277 30.24556457369399 29.18770792875323 20.8905009985535 47 18.717435527570387 29.845554787900674 30.862565036041754 20.57444464848718 48 18.05562480277446 29.332017412518567 31.605882748234766 21.006475036472207 49 19.149868495660343 28.875522541234268 30.671834969408557 21.30277399369683 50 17.717054934532733 28.815569073300857 32.108612396184654 21.358763595981756 51 16.90440054119153 29.48843526713203 31.268799329611223 22.33836486206522 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2291.0 1 3719.0 2 5147.0 3 39322.5 4 73498.0 5 47878.5 6 22259.0 7 21901.0 8 21543.0 9 23972.5 10 26402.0 11 28290.5 12 30179.0 13 30319.0 14 30459.0 15 29358.5 16 28258.0 17 27072.0 18 25886.0 19 24030.5 20 22175.0 21 23910.5 22 25646.0 23 27324.5 24 29003.0 25 32285.0 26 42742.5 27 49918.0 28 56542.5 29 63167.0 30 75821.0 31 88475.0 32 99567.0 33 110659.0 34 119844.5 35 129030.0 36 145855.0 37 162680.0 38 168077.0 39 173474.0 40 186137.5 41 198801.0 42 210636.0 43 222471.0 44 234120.5 45 245770.0 46 263305.5 47 280841.0 48 281941.0 49 283041.0 50 257361.5 51 231682.0 52 204402.5 53 177123.0 54 152729.5 55 128336.0 56 115446.0 57 102556.0 58 89408.5 59 76261.0 60 66148.5 61 56036.0 62 44911.5 63 33787.0 64 25205.5 65 16624.0 66 13630.5 67 10637.0 68 7865.5 69 5094.0 70 3769.5 71 2445.0 72 1691.0 73 937.0 74 647.0 75 297.0 76 237.0 77 257.5 78 278.0 79 156.0 80 34.0 81 45.0 82 56.0 83 46.0 84 36.0 85 21.0 86 6.0 87 4.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 1.0 94 2.0 95 2.0 96 2.0 97 2.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3229171.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.438763833448608 #Duplication Level Percentage of deduplicated Percentage of total 1 74.45761813695351 15.218216727022924 2 10.027631422903514 4.0990478092318625 3 4.005321013586231 2.455914308215139 4 2.1851521187787553 1.7864723238351528 5 1.372594216974595 1.4027064519950532 6 0.9402034648566839 1.1529957944157516 7 0.6707154616559441 0.9596016444159807 8 0.4904579383465936 0.8019483177684898 9 0.3888634345270025 0.7153099111584998 >10 3.3829853733691677 15.534993050234194 >50 0.9804834834456239 14.450139100124446 >100 1.0910463581123078 37.80915530014653 >500 0.0030789228844725685 0.40957585474180447 >1k 0.003540761317143454 1.3288482041415555 >5k 1.5394614422362845E-4 0.1781216035717412 >10k+ 1.5394614422362845E-4 1.6969535989809479 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53932 1.670150016830945 No Hit CGTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTT 5661 0.17530815184454462 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCT 4434 0.13731078347972284 No Hit CGTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC 3716 0.1150759746077244 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.290310113648364E-5 0.0 0.0 0.09646438668004884 0.0 2 9.290310113648364E-5 0.0 0.0 0.31506538365419484 0.0 3 9.290310113648364E-5 0.0 0.0 0.519235432251807 0.0 4 9.290310113648364E-5 0.0 0.0 0.7649331670574274 0.0 5 9.290310113648364E-5 0.0 0.0 1.4215722858900939 0.0 6 9.290310113648364E-5 0.0 0.0 2.2778601690650633 0.0 7 9.290310113648364E-5 0.0 0.0 2.91467995965528 0.0 8 9.290310113648364E-5 0.0 0.0 3.8708696442523483 0.0 9 9.290310113648364E-5 0.0 0.0 4.288964567066904 0.0 10 9.290310113648364E-5 0.0 0.0 4.791012925608461 0.0 11 9.290310113648364E-5 0.0 0.0 5.519868721724554 0.0 12 9.290310113648364E-5 0.0 0.0 6.055114455072215 0.0 13 9.290310113648364E-5 0.0 0.0 6.291336073561914 0.0 14 9.290310113648364E-5 0.0 0.0 6.407836562387065 0.0 15 9.290310113648364E-5 0.0 0.0 6.550040242526642 0.0 16 9.290310113648364E-5 0.0 0.0 6.817074722893275 0.0 17 9.290310113648364E-5 0.0 0.0 7.157781362461139 0.0 18 9.290310113648364E-5 0.0 0.0 7.508118956846819 0.0 19 9.290310113648364E-5 0.0 0.0 7.7747818248089064 0.0 20 9.290310113648364E-5 0.0 0.0 8.037387924021367 0.0 21 9.290310113648364E-5 0.0 0.0 8.35115266425965 0.0 22 9.290310113648364E-5 0.0 0.0 8.72183603779422 0.0 23 1.2387080151531152E-4 0.0 0.0 9.090971026309848 0.0 24 1.2387080151531152E-4 0.0 0.0 9.359120343890119 0.0 25 1.2387080151531152E-4 0.0 0.0 9.603517435279828 0.0 26 1.2387080151531152E-4 0.0 0.0 9.828157133827846 0.0 27 1.2387080151531152E-4 0.0 0.0 10.055893602413747 0.0 28 1.2387080151531152E-4 0.0 0.0 10.312491967752715 0.0 29 1.2387080151531152E-4 0.0 0.0 10.585936762097765 0.0 30 1.2387080151531152E-4 0.0 0.0 10.912274388689852 0.0 31 1.2387080151531152E-4 0.0 0.0 11.194606913043627 0.0 32 1.2387080151531152E-4 0.0 0.0 11.454425919221991 0.0 33 1.2387080151531152E-4 0.0 0.0 11.713625571392782 0.0 34 1.2387080151531152E-4 0.0 0.0 11.983756821797297 0.0 35 1.2387080151531152E-4 0.0 0.0 12.288633832026857 0.0 36 1.2387080151531152E-4 0.0 0.0 12.570656679376842 0.0 37 1.2387080151531152E-4 0.0 0.0 12.864694994473814 0.0 38 1.2387080151531152E-4 0.0 0.0 13.181959084854906 0.0 39 1.2387080151531152E-4 0.0 0.0 13.639475890251708 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGCG 35 1.2128476E-7 45.0 1 ATTCGAT 20 7.035185E-4 45.0 9 CCCACCG 35 1.2128476E-7 45.0 44 GCGATCG 20 7.035185E-4 45.0 9 CGCGGTA 30 2.1667274E-6 44.999996 38 CGTTTTT 19310 0.0 44.126102 1 CGACGGT 530 0.0 42.0283 28 CGACCGG 60 3.6379788E-12 41.249996 2 TACTCGC 55 6.184564E-11 40.909092 45 CGGTCTA 550 0.0 40.909092 31 CACGACG 555 0.0 40.54054 26 TACGGGA 1635 0.0 40.458714 4 CTCACGA 575 0.0 40.304348 24 CGGTTGA 45 1.9301297E-8 40.0 37 TGCGGGA 2340 0.0 39.903843 4 GTCTACG 85 0.0 39.705883 1 CTATGCG 125 0.0 39.600002 1 ACGGGAT 1940 0.0 39.54897 5 CGAGGGC 475 0.0 39.31579 4 TCACGAC 575 0.0 39.130436 25 >>END_MODULE