SRR1547568_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547568_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1549377
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5343	0.34484828418131935	No Hit
GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG	3231	0.20853543069246544	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2284	0.14741408966313557	No Hit
AGGCAGGAGACTCAGCCCGAGGAAATCGCAGATAAGTTTTTAATTAAAAAG	1674	0.10804342648690408	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	55	1.8189894E-12	45.000004	6
CTCGCGC	220	0.0	45.000004	33
GCCCCCG	20	7.0340483E-4	45.0	12
CTAGACG	100	0.0	45.0	1
TTAGGCG	35	1.2123019E-7	45.0	1
AGCCGAT	35	1.2123019E-7	45.0	38
CGAACGC	20	7.0340483E-4	45.0	25
CGAACCA	20	7.0340483E-4	45.0	15
CGAACAC	35	1.2123019E-7	45.0	28
TCCGCAA	35	1.2123019E-7	45.0	22
CTCGTAG	25	3.8914368E-5	45.0	1
ACGCATA	25	3.8914368E-5	45.0	35
TCCGATC	20	7.0340483E-4	45.0	17
CGTGCGT	35	1.2123019E-7	45.0	30
ACGTTAG	50	2.1827873E-11	45.0	1
CCGATAT	25	3.8914368E-5	45.0	11
AACCCGC	40	6.8175723E-9	45.0	19
GCGCGAT	25	3.8914368E-5	45.0	40
CATGACG	20	7.0340483E-4	45.0	30
CGTTGCG	20	7.0340483E-4	45.0	15