SRR1547567_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547567_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1885982
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16773	0.889351011833623	No Hit
CTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGCT	2145	0.11373385323932043	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAG	45	3.8562575E-10	45.000004	1
ACGACGT	45	3.8562575E-10	45.000004	15
ACCGGTG	25	3.89176E-5	45.0	14
CGACGTG	25	3.89176E-5	45.0	16
GCGCGGT	25	3.89176E-5	45.0	29
CCGGCCC	25	3.89176E-5	45.0	40
TAACGCC	55	1.8189894E-12	45.0	12
CGTTCCG	20	7.0344395E-4	45.0	28
TCTAGCG	55	1.8189894E-12	45.0	1
CCCCGTA	20	7.0344395E-4	45.0	18
CTACGCG	35	1.2124838E-7	45.0	1
ATCCCGG	20	7.0344395E-4	45.0	27
GTCGTAC	25	3.89176E-5	45.0	44
TTAACGC	35	1.2124838E-7	45.0	21
TCCCGGT	20	7.0344395E-4	45.0	28
ATGCGAT	25	3.89176E-5	45.0	1
ACCGTAG	25	3.89176E-5	45.0	36
CGATATC	40	6.8193913E-9	45.0	10
ATCGCTT	25	3.89176E-5	45.0	25
CGCCCGA	20	7.0344395E-4	45.0	33