SRR1547566_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547566_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1418661
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4646	0.327491909624639	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1642	0.11574294352209584	No Hit
GGGAATGGTTACATCAGTGCGGCAGAACTGCGCCACGTCATGACAAACTTA	1530	0.10784817514543643	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1427	0.1005878077990443	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	30	2.1658634E-6	45.000004	23
AGCCGTA	35	1.2121927E-7	45.000004	32
TCGTTGA	25	3.8912687E-5	45.000004	24
TCGTTAA	35	1.2121927E-7	45.000004	11
CTCGTTA	25	3.8912687E-5	45.000004	11
GTCGACG	35	1.2121927E-7	45.000004	24
CACGGCG	25	3.8912687E-5	45.000004	17
CGTGCCG	25	3.8912687E-5	45.000004	29
TTTCGCG	30	2.1658634E-6	45.000004	1
CGTTGTA	25	3.8912687E-5	45.000004	33
ATATGCG	30	2.1658634E-6	45.000004	1
TAACGAC	25	3.8912687E-5	45.000004	37
CCTCGGT	25	3.8912687E-5	45.000004	21
ACGGGTC	70	0.0	45.000004	5
AATGCGC	30	2.1658634E-6	45.000004	37
ATATCGT	30	2.1658634E-6	45.000004	18
ACGATAC	25	3.8912687E-5	45.000004	26
TGACCGG	70	0.0	45.000004	2
TATCTCG	25	3.8912687E-5	45.000004	1
CGCTATA	35	1.2121927E-7	45.000004	42