SRR1547565_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547565_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2436356
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17712	0.726987353243943	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3745	0.15371316835470678	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3362	0.1379929698287114	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2583	0.10601898901474169	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGATA	45	3.8562575E-10	45.000004	32
GCCCCGA	25	3.8920964E-5	45.0	32
CGAACAC	40	6.8212103E-9	45.0	28
CTCCGAT	25	3.8920964E-5	45.0	18
GCGCGTT	35	1.2126839E-7	45.0	9
GCGCGAT	20	7.0348446E-4	45.0	9
TAGCGAA	20	7.0348446E-4	45.0	43
TCGATAG	100	0.0	45.0	1
TCCGTAC	25	3.8920964E-5	45.0	32
TACTCGC	55	1.8189894E-12	45.0	45
CGTCGCA	20	7.0348446E-4	45.0	42
GACGCGT	20	7.0348446E-4	45.0	9
ATACGCG	35	1.2126839E-7	45.0	1
TGTAACG	75	0.0	45.0	1
TCGCGTC	20	7.0348446E-4	45.0	20
AGTCGTC	25	3.8920964E-5	45.0	45
TAATCGC	35	1.2126839E-7	45.0	16
CGCGGGC	105	0.0	44.999996	4
GCGCATT	30	2.1665073E-6	44.999996	10
TATCGAT	30	2.1665073E-6	44.999996	12