SRR1547562_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547562_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1177000
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7229	0.6141886151231946	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	3357	0.2852166525063721	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2163	0.18377230246389126	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2009	0.17068819031435856	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG	1417	0.12039082412914187	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1404	0.11928632115548003	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1344	0.11418861512319456	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	1329	0.1129141886151232	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1323	0.11240441801189464	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1226	0.10416312659303313	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	65	0.0	45.000004	5
TCGCCTA	20	7.0333557E-4	45.0	10
CGGGTCG	20	7.0333557E-4	45.0	6
CGGCGTT	20	7.0333557E-4	45.0	43
CTATGCG	20	7.0333557E-4	45.0	1
GGTACGC	20	7.0333557E-4	45.0	8
TGCCCGA	20	7.0333557E-4	45.0	24
CGAACCG	25	3.890864E-5	45.0	17
GCGACTA	35	1.2119563E-7	45.0	33
GTCGATT	20	7.0333557E-4	45.0	28
CTCCGGT	20	7.0333557E-4	45.0	35
CTCCGAT	25	3.890864E-5	45.0	30
CATGCGT	45	3.8562575E-10	45.0	31
GCGCGTA	20	7.0333557E-4	45.0	18
CCGGCGT	20	7.0333557E-4	45.0	42
ACCGCGA	20	7.0333557E-4	45.0	26
ACCGCAT	25	3.890864E-5	45.0	33
CGCATGT	20	7.0333557E-4	45.0	39
CGCATCA	25	3.890864E-5	45.0	35
CCGGATA	40	6.8157533E-9	45.0	21