SRR1547560_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547560_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1176727
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6416	0.5452411646881562	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1717	0.14591319821844828	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1541	0.1309564580399702	No Hit
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC	1376	0.11693451412264698	No Hit
CTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCT	1329	0.11294038464316701	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1313	0.11158068099057811	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1295	0.11005101438141557	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1193	0.10138290359616121	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	1185	0.10070305176986674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCCG	30	2.165545E-6	45.000004	44
AACCGTA	30	2.165545E-6	45.000004	35
CTATGCG	60	0.0	45.000004	1
TCTTGCG	30	2.165545E-6	45.000004	30
GTTAGCG	30	2.165545E-6	45.000004	1
TCGGCCC	30	2.165545E-6	45.000004	14
ATCCGCG	30	2.165545E-6	45.000004	15
ATTCCGT	60	0.0	45.000004	39
CCGTAAA	30	2.165545E-6	45.000004	37
CGGATCA	30	2.165545E-6	45.000004	31
TACGACT	60	0.0	45.000004	19
CGCTAGC	30	2.165545E-6	45.000004	24
TCCCGAC	30	2.165545E-6	45.000004	28
ACGTACT	30	2.165545E-6	45.000004	30
ACCCGGT	30	2.165545E-6	45.000004	30
GCTCGCG	30	2.165545E-6	45.000004	22
TCGGTCA	30	2.165545E-6	45.000004	27
TCGCGGC	30	2.165545E-6	45.000004	12
CGCCCGA	30	2.165545E-6	45.000004	37
AATGTCG	30	2.165545E-6	45.000004	1