SRR1547559_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547559_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1194012
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16910	1.4162336726934068	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	2069	0.1732813405560413	No Hit
CTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGCT	2060	0.17252757928731033	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	1736	0.1453921736129955	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1526	0.12780441067593962	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCC	1275	0.10678284640355373	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCACG	35	1.2119744E-7	45.000004	26
CTAGACG	70	0.0	45.000004	1
AGCCGTA	25	3.8908962E-5	45.000004	31
CCTTACG	25	3.8908962E-5	45.000004	1
TCCGCTG	50	2.1827873E-11	45.000004	34
TCACCGA	25	3.8908962E-5	45.000004	14
CTCGTCC	35	1.2119744E-7	45.000004	37
TTAGCCG	25	3.8908962E-5	45.000004	29
GCGCGCG	35	1.2119744E-7	45.000004	1
CTTTTCG	25	3.8908962E-5	45.000004	32
TTTCGCA	25	3.8908962E-5	45.000004	21
CGCATAC	35	1.2119744E-7	45.000004	42
CACGCTT	25	3.8908962E-5	45.000004	28
GGTCCGA	25	3.8908962E-5	45.000004	8
CGCGCGT	25	3.8908962E-5	45.000004	39
CGCGCAT	25	3.8908962E-5	45.000004	12
GCGCATT	25	3.8908962E-5	45.000004	13
GCGCATC	25	3.8908962E-5	45.000004	44
CCTAACG	25	3.8908962E-5	45.000004	41
CCTCGCG	25	3.8908962E-5	45.000004	1