SRR1547558_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547558_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1211052
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8058	0.6653719245746673	No Hit
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	1460	0.12055634274993972	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	1447	0.11948289586244025	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	1436	0.1185745946499407	Illumina Single End Adapter 1 (95% over 21bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1321	0.10907871833744547	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCA	35	1.2119926E-7	45.000004	39
TCGCACG	35	1.2119926E-7	45.000004	1
ACTGCGC	45	3.8562575E-10	45.000004	33
GTCGATG	65	0.0	45.000004	1
ACTTGCG	35	1.2119926E-7	45.000004	1
TAGAACG	70	0.0	45.000004	1
TATGCGA	35	1.2119926E-7	45.000004	39
TTATCGG	45	3.8562575E-10	45.000004	1
TCAGGCG	35	1.2119926E-7	45.000004	13
GTGGACG	75	0.0	45.000004	1
TGCGCAA	45	3.8562575E-10	45.000004	1
GTCACGT	35	1.2119926E-7	45.000004	33
CGGGCTT	90	0.0	45.000004	6
CAAATCG	35	1.2119926E-7	45.000004	1
ATAACGC	35	1.2119926E-7	45.000004	11
GCTAACG	90	0.0	45.000004	1
CGATCCG	35	1.2119926E-7	45.000004	16
TGCACGT	45	3.8562575E-10	45.000004	40
AGTCGGC	35	1.2119926E-7	45.000004	30
AGTCGAT	45	3.8562575E-10	45.000004	10