##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547558_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1211052 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.422400524502663 31.0 31.0 33.0 30.0 34.0 2 31.841662455451953 31.0 31.0 34.0 30.0 34.0 3 31.96891710677989 33.0 31.0 34.0 30.0 34.0 4 35.708590547722146 37.0 35.0 37.0 33.0 37.0 5 35.61178793313582 37.0 35.0 37.0 33.0 37.0 6 35.653955404061925 37.0 35.0 37.0 33.0 37.0 7 36.00088683227475 37.0 35.0 37.0 35.0 37.0 8 35.95932792316102 37.0 35.0 37.0 35.0 37.0 9 37.631911759362936 39.0 37.0 39.0 35.0 39.0 10 37.16188157073354 39.0 37.0 39.0 33.0 39.0 11 36.92503872666079 39.0 37.0 39.0 33.0 39.0 12 36.37438937386669 38.0 35.0 39.0 32.0 39.0 13 36.13655152710206 38.0 35.0 39.0 32.0 39.0 14 37.18251817428153 39.0 35.0 41.0 32.0 41.0 15 37.41710265124867 39.0 35.0 41.0 32.0 41.0 16 37.53203082939461 39.0 35.0 41.0 33.0 41.0 17 37.486735499384004 39.0 35.0 41.0 33.0 41.0 18 37.43975320630328 39.0 35.0 41.0 33.0 41.0 19 37.44273408573703 39.0 36.0 41.0 33.0 41.0 20 37.31902676350809 39.0 35.0 41.0 32.0 41.0 21 37.16189891102942 39.0 35.0 41.0 32.0 41.0 22 37.06877326489697 39.0 35.0 41.0 32.0 41.0 23 36.999841460152 39.0 35.0 41.0 32.0 41.0 24 36.92864798538791 38.0 35.0 41.0 32.0 41.0 25 36.88042792547306 38.0 35.0 41.0 32.0 41.0 26 36.88983379739268 38.0 35.0 41.0 32.0 41.0 27 36.847999095001704 38.0 35.0 41.0 32.0 41.0 28 36.825240369529965 38.0 35.0 41.0 32.0 41.0 29 36.77941079326074 38.0 35.0 41.0 32.0 41.0 30 36.73416748413776 38.0 35.0 40.0 31.0 41.0 31 36.5905972658482 38.0 35.0 40.0 31.0 41.0 32 36.43620752866103 38.0 35.0 41.0 31.0 41.0 33 36.334604955030834 38.0 35.0 41.0 30.0 41.0 34 36.2973001985051 38.0 35.0 41.0 30.0 41.0 35 36.20413822032415 38.0 35.0 41.0 30.0 41.0 36 36.13029250601956 38.0 35.0 41.0 30.0 41.0 37 36.06537208972034 38.0 35.0 40.0 30.0 41.0 38 35.963246830028766 38.0 35.0 40.0 30.0 41.0 39 35.954272814049276 38.0 35.0 40.0 30.0 41.0 40 35.8991075527723 38.0 35.0 40.0 30.0 41.0 41 35.87348107265419 38.0 35.0 40.0 30.0 41.0 42 35.845611088541204 38.0 35.0 40.0 30.0 41.0 43 35.81139785905147 38.0 35.0 40.0 30.0 41.0 44 35.70004508476927 38.0 35.0 40.0 29.0 41.0 45 35.63112484022156 38.0 35.0 40.0 29.0 41.0 46 35.60864355948382 38.0 35.0 40.0 29.0 41.0 47 35.530657643106984 38.0 35.0 40.0 29.0 41.0 48 35.47103262287664 37.0 34.0 40.0 29.0 41.0 49 35.43493508123516 37.0 34.0 40.0 28.0 41.0 50 35.31870142652834 37.0 34.0 40.0 28.0 41.0 51 34.857321568355445 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 4.0 11 1.0 12 5.0 13 4.0 14 9.0 15 17.0 16 42.0 17 106.0 18 293.0 19 595.0 20 1065.0 21 1754.0 22 2852.0 23 4429.0 24 6681.0 25 9574.0 26 12982.0 27 15292.0 28 17668.0 29 21432.0 30 25572.0 31 32587.0 32 41847.0 33 55687.0 34 96134.0 35 157427.0 36 94318.0 37 110824.0 38 165085.0 39 336643.0 40 120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.95077337719602 25.080591089399963 30.140984862747427 11.827650670656586 2 30.88496612862206 26.47582432463676 29.433500791047784 13.205708755693395 3 27.824073615336086 26.304403113986847 32.222150659096386 13.649372611580675 4 27.04590719473648 27.85272638994857 31.41805636752179 13.68331004779316 5 24.2050712933879 32.408600126171294 29.51912882353524 13.867199756905565 6 21.48231454966426 41.49342885359175 26.50282564249925 10.52143095424474 7 86.43906289738177 4.674200612360163 6.882528578459059 2.004207911798998 8 87.01385241921899 4.072574918335463 6.334822947321833 2.5787497151237107 9 81.95684413220901 6.801937489059099 7.895201857558552 3.346016521173327 10 43.04290814927848 28.35146632844833 16.505814779216745 12.09981074305645 11 34.78603726347011 26.368562208724317 22.122666904476436 16.722733623329137 12 32.76465420147112 23.91722238186304 25.961312974174522 17.356810442491323 13 24.30192923177535 33.67485458923316 26.947893236624026 15.07532294236746 14 18.271387190640866 38.66481373219317 26.63428159979918 16.429517477366783 15 15.742016032342129 32.06955605539646 37.442322873006276 14.746105039255127 16 18.212512757503394 28.35584268883582 37.32655575483134 16.10508879882945 17 18.565263919303217 27.87336959932356 27.558519369936217 26.002847111437 18 20.42207931616479 30.027942648209986 30.924270799272037 18.625707236353186 19 23.95380214887552 32.44906081654628 25.950578505299525 17.64655852927868 20 27.188097620911407 30.16253637333492 25.81573706166209 16.833628944091583 21 23.734571265313132 31.809947054296593 27.443743125811277 17.011738554578994 22 22.51653933935124 27.507654502036242 27.212704326486392 22.763101832126118 23 18.55717178122822 32.008699874159 27.18578558146141 22.248342763151378 24 18.529014443640733 30.701076419509647 33.11269871153345 17.657210425316173 25 17.9973279429785 31.97055122323402 30.675396267047162 19.356724566740322 26 17.252355803053874 36.35244399084432 26.8009135858741 19.594286620227702 27 17.765380842441118 37.17041051911891 28.52420870449824 16.53999993394173 28 17.10719275472895 33.09279865769595 33.129460997545934 16.670547590029162 29 17.23683210960388 29.77865525179761 32.92765298269604 20.05685965590247 30 18.382695375590806 33.8001175837206 29.883275036910057 17.93391200377853 31 24.74286818402513 32.01522312832149 25.673216344137163 17.568692343516215 32 24.562281388412718 31.340437900271827 26.571691388974216 17.525589322341236 33 23.76305889425062 32.68265937383366 24.553446094800226 19.0008356371155 34 20.190379934139905 32.201755168233895 25.991452059862002 21.616412837764194 35 19.309327758015346 31.841407305384077 28.410093043073292 20.43917189352728 36 25.257874971512372 30.57936405703471 26.606784844911697 17.55597612654122 37 20.287733309552355 35.09163933505746 27.968906372311015 16.651720983079173 38 20.272127043264867 34.7953679941076 24.34610569983783 20.586399262789705 39 19.393882343615303 33.52011309175824 27.311213721623844 19.774790843002613 40 22.156521767851423 32.116209708583945 25.97551550222451 19.751753021340125 41 18.568236541453214 30.03149328022248 27.66099226127367 23.73927791705063 42 20.570710423664714 30.57779517312221 26.190700316749403 22.66079408646367 43 22.084022816526456 29.17752499479791 26.31654132109934 22.42191086757629 44 19.559771174152722 31.930503397046532 27.467689248686266 21.04203618011448 45 18.905216291290547 36.034043129444484 25.110069592387447 19.950670986877526 46 22.84088544505108 33.38320732718331 25.736136846312128 18.03977038145348 47 20.052813586864975 31.38618325224681 26.453612231349272 22.107390929538948 48 20.54288337742723 30.02802522104749 30.006638856134998 19.42245254539029 49 21.177538206451914 28.969936881323015 29.220710588810388 20.631814323414684 50 20.081796652827457 31.841737596734077 28.36583400217332 19.710631748265143 51 19.07828895869046 32.615775375458696 26.027784108361985 22.27815155748886 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1373.0 1 1832.0 2 2291.0 3 6452.5 4 10614.0 5 7090.0 6 3566.0 7 4452.5 8 5339.0 9 6444.5 10 7550.0 11 8798.0 12 10046.0 13 10130.5 14 10215.0 15 9797.0 16 9379.0 17 8739.5 18 8100.0 19 6941.5 20 5783.0 21 5626.5 22 5470.0 23 5579.0 24 5688.0 25 7017.0 26 10430.0 27 12514.0 28 15473.5 29 18433.0 30 21924.5 31 25416.0 32 31163.0 33 36910.0 34 39690.0 35 42470.0 36 45944.5 37 49419.0 38 54025.5 39 58632.0 40 70245.5 41 81859.0 42 96988.0 43 112117.0 44 113471.0 45 114825.0 46 119092.0 47 123359.0 48 120127.5 49 116896.0 50 107980.5 51 99065.0 52 86156.0 53 73247.0 54 60117.5 55 46988.0 56 41368.0 57 35748.0 58 31790.5 59 27833.0 60 23257.0 61 18681.0 62 15023.0 63 11365.0 64 8514.0 65 5663.0 66 4444.0 67 3225.0 68 2184.0 69 1143.0 70 819.0 71 495.0 72 487.0 73 479.0 74 378.0 75 184.0 76 91.0 77 95.5 78 100.0 79 56.0 80 12.0 81 7.0 82 2.0 83 10.0 84 18.0 85 11.5 86 5.0 87 3.5 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1211052.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.624296374348052 #Duplication Level Percentage of deduplicated Percentage of total 1 73.71332401285409 14.465721171665958 2 10.86806308547648 4.26556182009004 3 4.322674223170005 2.5448832025572874 4 2.3245143037757225 1.8246783049482438 5 1.435518247899821 1.4085517773785463 6 0.9152042197277985 1.0776143310595363 7 0.6649948601398689 0.9135039355962044 8 0.46259417206649683 0.7262468106943274 9 0.34618920771794026 0.6114347652471841 >10 2.878563040070734 12.357604384625647 >50 0.8213860104715621 11.702232383183556 >100 1.2388884331087096 46.12257227705507 >500 0.00468147466994016 0.5578218611377815 >1k 0.0029791202445073744 0.7485787305551634 >5k 4.2558860635819637E-4 0.6729942442054565 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8058 0.6653719245746673 No Hit CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT 1460 0.12055634274993972 Illumina Single End Adapter 1 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC 1447 0.11948289586244025 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC 1436 0.1185745946499407 Illumina Single End Adapter 1 (95% over 21bp) GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1321 0.10907871833744547 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1289787721749355 0.0 2 0.0 0.0 0.0 0.4829685265372585 0.0 3 0.0 0.0 0.0 0.6770972674996615 0.0 4 0.0 0.0 0.0 0.9723777343995138 0.0 5 0.0 0.0 0.0 1.7062025412616468 0.0 6 0.0 0.0 0.0 2.262330601823869 0.0 7 0.0 0.0 0.0 2.6732956140611632 0.0 8 0.0 0.0 0.0 3.5842391573607078 0.0 9 0.0 0.0 0.0 3.835756020385582 0.0 10 0.0 0.0 0.0 4.426729818372786 0.0 11 0.0 0.0 0.0 5.407364836522296 0.0 12 0.0 0.0 0.0 6.096930602484451 0.0 13 0.0 0.0 0.0 6.350429213609325 0.0 14 0.0 0.0 0.0 6.435974673259282 0.0 15 0.0 0.0 0.0 6.582954324009209 0.0 16 0.0 0.0 0.0 6.957422142071521 0.0 17 0.0 0.0 0.0 7.422802654221289 0.0 18 0.0 0.0 0.0 7.886614282458557 0.0 19 0.0 0.0 0.0 8.18016071977091 0.0 20 0.0 0.0 0.0 8.469578515208266 0.0 21 0.0 0.0 0.0 8.849991577570576 0.0 22 0.0 0.0 0.0 9.246341197570377 0.0 23 0.0 0.0 0.0 9.678362283370161 0.0 24 0.0 0.0 0.0 9.986111248732508 0.0 25 0.0 0.0 0.0 10.249436027519875 0.0 26 0.0 0.0 0.0 10.485264051419758 0.0 27 0.0 0.0 0.0 10.71811945316964 0.0 28 0.0 0.0 0.0 10.964929664457017 0.0 29 0.0 0.0 0.0 11.25773294623187 0.0 30 0.0 0.0 0.0 11.566720504156716 0.0 31 0.0 0.0 0.0 11.865386457394067 0.0 32 0.0 0.0 0.0 12.14175774450643 0.0 33 0.0 0.0 0.0 12.425643159831287 0.0 34 0.0 0.0 0.0 12.714070081218644 0.0 35 0.0 0.0 0.0 13.051462695243474 0.0 36 0.0 0.0 0.0 13.348064327543327 0.0 37 0.0 0.0 0.0 13.664400868005668 0.0 38 0.0 0.0 0.0 13.969507502568016 0.0 39 0.0 0.0 0.0 14.316891429930342 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGCA 35 1.2119926E-7 45.000004 39 TCGCACG 35 1.2119926E-7 45.000004 1 ACTGCGC 45 3.8562575E-10 45.000004 33 GTCGATG 65 0.0 45.000004 1 ACTTGCG 35 1.2119926E-7 45.000004 1 TAGAACG 70 0.0 45.000004 1 TATGCGA 35 1.2119926E-7 45.000004 39 TTATCGG 45 3.8562575E-10 45.000004 1 TCAGGCG 35 1.2119926E-7 45.000004 13 GTGGACG 75 0.0 45.000004 1 TGCGCAA 45 3.8562575E-10 45.000004 1 GTCACGT 35 1.2119926E-7 45.000004 33 CGGGCTT 90 0.0 45.000004 6 CAAATCG 35 1.2119926E-7 45.000004 1 ATAACGC 35 1.2119926E-7 45.000004 11 GCTAACG 90 0.0 45.000004 1 CGATCCG 35 1.2119926E-7 45.000004 16 TGCACGT 45 3.8562575E-10 45.000004 40 AGTCGGC 35 1.2119926E-7 45.000004 30 AGTCGAT 45 3.8562575E-10 45.000004 10 >>END_MODULE