SRR1547554_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547554_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1733071
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9607	0.554333896303152	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2098	0.12105678301696815	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTACGA	35	1.212411E-7	45.000004	17
CGTGTTA	70	0.0	45.000004	44
GCGTCTA	35	1.212411E-7	45.000004	8
TCTATAC	35	1.212411E-7	45.000004	32
TCGCATC	20	7.0342794E-4	45.0	26
CGAACCC	55	1.8189894E-12	45.0	22
GTCGATA	20	7.0342794E-4	45.0	23
GTCGACG	25	3.8916296E-5	45.0	17
ACGCACC	45	3.8562575E-10	45.0	42
GACGTAT	45	3.8562575E-10	45.0	11
GCACGTT	20	7.0342794E-4	45.0	32
CACGCGT	25	3.8916296E-5	45.0	27
TAGCCGT	40	6.8193913E-9	45.0	28
ACCTCGC	25	3.8916296E-5	45.0	40
CTAACGG	55	1.8189894E-12	45.0	2
CTAACCG	45	3.8562575E-10	45.0	41
CCGTAAC	20	7.0342794E-4	45.0	11
TACGCAA	25	3.8916296E-5	45.0	22
AAGTTCG	20	7.0342794E-4	45.0	18
ACAATCG	25	3.8916296E-5	45.0	31