SRR1547553_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547553_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2214534
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7730	0.3490576346987673	No Hit
GGGAATGGTTACATCAGTGCGGCAGAACTGCGCCACGTCATGACAAACTTA	2512	0.11343244222034973	No Hit
GGCTCTGGGCTCCTCTACAAAAACAAAAGTTAAAAAAAAACACACAAAAAG	2303	0.10399479077765346	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTATG	30	2.1664164E-6	45.000004	29
CGACGTA	35	1.2126111E-7	45.0	17
CGATTCG	35	1.2126111E-7	45.0	43
CCGTCGA	20	7.0347043E-4	45.0	44
CGTTAAC	35	1.2126111E-7	45.0	32
CGCCTAT	20	7.0347043E-4	45.0	45
GTCGGTA	45	3.8562575E-10	45.0	43
ATTACGA	50	2.1827873E-11	44.999996	34
CGACATA	25	3.891982E-5	44.999996	24
ATACGTC	25	3.891982E-5	44.999996	28
GCCGTCG	25	3.891982E-5	44.999996	39
TATAGCG	100	0.0	42.749996	1
TCACGAC	715	0.0	42.16783	25
CACGACG	715	0.0	42.16783	26
TAGGGAC	2065	0.0	41.186443	5
ACGGTCT	730	0.0	40.993153	30
CATTACG	55	6.184564E-11	40.909092	33
TCTCACG	730	0.0	40.684933	23
CTATGCG	150	0.0	40.500004	1
TGCGACA	50	1.0822987E-9	40.499996	30