SRR1547552_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547552_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1880586
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7066	0.3757339467591485	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7020	0.37328790068627543	No Hit
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT	4994	0.26555552365060675	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	4359	0.23178945286203342	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	3655	0.19435431296415054	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3525	0.18744157406255285	No Hit
GAGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	2803	0.1490492857013718	No Hit
AAGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	2789	0.14830483689658436	No Hit
TCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	2134	0.11347526781545753	Illumina Single End Adapter 1 (95% over 21bp)
AAGAGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT	1886	0.10028788898779424	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	30	2.1662418E-6	45.000004	6
CTATGCG	20	7.034432E-4	45.000004	15
TCGTTGA	120	0.0	45.000004	24
GTCGCAA	40	6.8193913E-9	45.000004	28
GTCGACG	20	7.034432E-4	45.000004	9
GTCGAAC	35	1.2124838E-7	45.000004	36
CACGGAT	30	2.1662418E-6	45.000004	39
CAACGAA	30	2.1662418E-6	45.000004	31
TCCGATC	40	6.8193913E-9	45.000004	13
TTAGCCG	30	2.1662418E-6	45.000004	1
GAGTCGT	30	2.1662418E-6	45.000004	38
GCGAAGT	30	2.1662418E-6	45.000004	45
AACCCGC	35	1.2124838E-7	45.000004	21
GAACTCG	30	2.1662418E-6	45.000004	21
CGCATAT	35	1.2124838E-7	45.000004	27
ACTCTCG	20	7.034432E-4	45.000004	42
CCGGATC	20	7.034432E-4	45.000004	39
GTTAGTC	60	0.0	45.000004	33
ACGGGTC	35	1.2124838E-7	45.000004	5
CCGTCGC	40	6.8193913E-9	45.000004	26