##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547548_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4439903 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.40060762588732 31.0 31.0 33.0 30.0 34.0 2 31.808300316470877 31.0 31.0 34.0 30.0 34.0 3 31.805533138899655 31.0 31.0 34.0 30.0 34.0 4 35.62815133573864 37.0 35.0 37.0 33.0 37.0 5 35.561541772421606 37.0 35.0 37.0 33.0 37.0 6 35.61571682984966 37.0 35.0 37.0 33.0 37.0 7 36.01566926124287 37.0 35.0 37.0 35.0 37.0 8 35.98076061571616 37.0 35.0 37.0 35.0 37.0 9 37.63645421983318 39.0 38.0 39.0 35.0 39.0 10 37.18166095070095 39.0 37.0 39.0 33.0 39.0 11 36.936400412351354 39.0 37.0 39.0 33.0 39.0 12 36.75799516340785 39.0 35.0 39.0 32.0 39.0 13 36.698112548855235 39.0 35.0 39.0 32.0 39.0 14 37.793589184268214 40.0 37.0 41.0 33.0 41.0 15 37.956313685231414 40.0 37.0 41.0 33.0 41.0 16 37.999162143857646 40.0 37.0 41.0 33.0 41.0 17 37.92276317748383 40.0 36.0 41.0 33.0 41.0 18 37.7648595025612 39.0 36.0 41.0 33.0 41.0 19 37.67711772081507 39.0 36.0 41.0 33.0 41.0 20 37.494112146143735 39.0 35.0 41.0 33.0 41.0 21 37.38061056739303 39.0 35.0 41.0 32.0 41.0 22 37.334181399908964 39.0 35.0 41.0 32.0 41.0 23 37.24867232459808 39.0 35.0 41.0 32.0 41.0 24 37.17871426470353 39.0 35.0 41.0 32.0 41.0 25 37.08518361775021 39.0 35.0 41.0 32.0 41.0 26 37.07449216795953 39.0 35.0 41.0 32.0 41.0 27 37.036175565096805 39.0 35.0 41.0 32.0 41.0 28 36.95676279414212 39.0 35.0 41.0 32.0 41.0 29 36.882258463754724 39.0 35.0 41.0 31.0 41.0 30 36.73925601527781 39.0 35.0 41.0 31.0 41.0 31 36.55545560342197 39.0 35.0 41.0 31.0 41.0 32 36.31549405471246 39.0 35.0 41.0 30.0 41.0 33 36.07707578296193 39.0 35.0 41.0 29.0 41.0 34 35.869994907546406 39.0 35.0 41.0 28.0 41.0 35 35.66597648642324 39.0 35.0 41.0 27.0 41.0 36 35.59957638714179 38.0 35.0 41.0 26.0 41.0 37 35.54732209239706 38.0 35.0 41.0 26.0 41.0 38 35.424429767947636 38.0 35.0 41.0 25.0 41.0 39 35.34616454458577 38.0 35.0 41.0 25.0 41.0 40 35.28185705858889 38.0 35.0 41.0 24.0 41.0 41 35.20106295115006 38.0 35.0 40.0 24.0 41.0 42 35.187273460703985 38.0 35.0 40.0 24.0 41.0 43 35.16319140305543 38.0 34.0 40.0 24.0 41.0 44 35.04737558455669 38.0 34.0 40.0 24.0 41.0 45 34.99292371927945 38.0 34.0 40.0 24.0 41.0 46 34.96807565390505 38.0 34.0 40.0 23.0 41.0 47 34.91091562135479 38.0 34.0 40.0 23.0 41.0 48 34.80479866339422 38.0 34.0 40.0 23.0 41.0 49 34.730519788382765 38.0 34.0 40.0 24.0 41.0 50 34.647047469280295 38.0 34.0 40.0 23.0 41.0 51 34.24805947337138 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 7.0 12 11.0 13 18.0 14 36.0 15 96.0 16 251.0 17 630.0 18 1495.0 19 2994.0 20 5483.0 21 9064.0 22 14148.0 23 21807.0 24 33945.0 25 54929.0 26 75347.0 27 85258.0 28 86474.0 29 89793.0 30 100302.0 31 119712.0 32 146462.0 33 185468.0 34 276197.0 35 370071.0 36 353294.0 37 439182.0 38 651980.0 39 1315022.0 40 422.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.08820237739428 23.268323654818584 29.109554870905963 17.53391909688117 2 34.75064657944104 24.44774131326743 28.56548893072664 12.236123176564893 3 27.666505326805563 24.159131404447347 35.69602759339563 12.478335675351467 4 25.375757082981316 26.327985093368028 34.82648156952978 13.469776254120866 5 22.743672553206682 30.285031001803418 33.14696289536055 13.82433354962935 6 20.478532976959183 39.01348745682057 29.953334566092998 10.554645000127255 7 83.54198278656088 2.660981557479972 11.62998380820482 2.167051847754332 8 83.5331087188166 2.381223193389585 11.338896367781008 2.746771720012802 9 78.11159387941584 5.406199189486798 13.192112530386362 3.2900944007110065 10 34.4734558390127 38.41534375863617 17.781064135860625 9.330136266490506 11 22.54666374468091 23.80306506696205 35.79902533906709 17.851245849289953 12 23.69957181496983 22.01951258845069 35.76472278786271 18.516192808716767 13 22.682905459871535 23.247287159201452 36.133064168293764 17.93674321263325 14 16.19636735307055 28.38476426174175 35.80445338558072 19.614414999606975 15 15.002985425582496 30.2273946074948 38.16961766957521 16.600002297347487 16 20.812459191112957 28.052684934783485 35.86546823207624 15.269387642027315 17 20.339025424654547 27.921803697062753 32.52221951695792 19.216951361324785 18 18.892011829988178 28.647044766518547 34.93828581390179 17.522657589591482 19 20.090709188916968 29.71664020587837 32.17329297509428 18.019357630110388 20 20.613400788260464 30.20984917913747 31.839501899027972 17.33724813357409 21 21.608377480318826 27.210436804587847 35.06637419781468 16.114811517278643 22 19.87151521103051 24.04133603819723 35.485977959428396 20.601170791343865 23 16.920865163045228 28.38321017373578 35.524199515169585 19.171725148049408 24 17.405267637603792 28.965137301423027 35.725037236173854 17.904557824799326 25 19.263033449154182 29.996218385852124 32.0689888945772 18.671759270416494 26 17.72520705970378 32.059281475293496 30.750041160809143 19.465470304193584 27 17.156861309807894 30.422961943087497 34.43068463432647 17.989492112778137 28 16.66164778825123 29.270526856104738 35.26779751719801 18.80002783844602 29 17.570316288441436 29.039846140782803 34.30919549368534 19.080642077090424 30 19.492993428009576 28.396566321381343 33.64199623280058 18.468444017808498 31 20.414905460772452 28.497897363973944 32.037253967034864 19.04994320821874 32 20.627094781124722 29.685558445758836 32.01846977287567 17.66887700024077 33 20.47465901845153 28.184422047058234 32.63627606278786 18.704642871702376 34 19.09255675180291 28.38746702349128 33.109191799910946 19.410784424794866 35 18.62547447545588 28.759209379123824 32.621253212063415 19.994062933356876 36 21.099537534941643 28.695739524039148 32.50332270772582 17.701400233293384 37 18.61335709361218 29.657404677534622 32.69251603019255 19.036722198660648 38 19.052916246143216 30.000520281636785 31.682133596161897 19.264429876058102 39 18.667389805588094 28.60823761239829 31.85150666579878 20.872865916214835 40 19.965098336607802 27.8648655162061 32.31987275397683 19.850163393209268 41 17.715702347551286 28.28933424896895 32.45203780352859 21.54292559995117 42 18.693921916762594 29.657967752899104 32.08666946102201 19.56144086931629 43 19.170621520335015 28.718825613983007 32.397712292363146 19.712840573318832 44 19.828203453994377 29.302149168574175 31.039011437862495 19.83063593956895 45 18.89401637828574 29.139217681107 30.270345996297664 21.696419944309593 46 20.389679684443557 28.790786645564104 30.631119643830058 20.18841402616228 47 18.96663057728964 28.999620036744044 31.95333321471212 20.080416171254193 48 18.463488954601033 29.05356265666164 32.25795698689814 20.224991401839183 49 19.60887433802045 27.915384637907632 31.858150955099696 20.617590068972227 50 17.963455507924383 28.36503410097022 32.78990554523376 20.88160484587163 51 17.353915164362824 28.653846716921517 32.30455710406286 21.6876810146528 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3382.0 1 5295.5 2 7209.0 3 61090.5 4 114972.0 5 76105.0 6 37238.0 7 36597.0 8 35956.0 9 38660.5 10 41365.0 11 44081.0 12 46797.0 13 47733.0 14 48669.0 15 46898.0 16 45127.0 17 43320.5 18 41514.0 19 40112.0 20 38710.0 21 38282.0 22 37854.0 23 38866.0 24 39878.0 25 46614.5 26 60219.5 27 67088.0 28 77007.5 29 86927.0 30 99180.0 31 111433.0 32 125676.0 33 139919.0 34 154593.0 35 169267.0 36 181802.0 37 194337.0 38 205856.5 39 217376.0 40 241552.0 41 265728.0 42 290258.0 43 314788.0 44 350504.0 45 386220.0 46 395683.0 47 405146.0 48 389193.5 49 373241.0 50 331655.0 51 290069.0 52 253995.0 53 217921.0 54 193901.0 55 169881.0 56 153365.0 57 136849.0 58 122607.5 59 108366.0 60 94175.0 61 79984.0 62 65093.0 63 50202.0 64 39717.5 65 29233.0 66 22560.0 67 15887.0 68 12161.5 69 8436.0 70 6632.5 71 4829.0 72 3483.0 73 2137.0 74 1635.5 75 938.5 76 743.0 77 591.5 78 440.0 79 272.5 80 105.0 81 94.0 82 83.0 83 72.5 84 62.0 85 48.5 86 35.0 87 21.0 88 7.0 89 6.0 90 5.0 91 4.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4439903.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.064278900812383 #Duplication Level Percentage of deduplicated Percentage of total 1 74.21031084139584 15.631866848791429 2 9.407272749097695 3.9631483376601175 3 3.780998649506044 2.3893203023037084 4 2.0993995337894824 1.768893492159086 5 1.4091059691599959 1.4840900567592843 6 0.9948616326788324 1.2573625739078693 7 0.7548625090225215 1.1130444095272176 8 0.617177174265125 1.0400313703948703 9 0.4809601016807748 0.9117969949770232 >10 4.252522334321337 19.72961050493417 >50 1.1319359960882496 16.998470060426538 >100 0.8515940878656458 29.05313721525875 >500 0.00531232090713153 0.7418755502075561 >1k 0.0030356119469197454 1.3326629812156878 >5k 5.420735619499545E-4 0.7080771196719038 >10k+ 1.084147123899909E-4 1.8766121818047699 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 82175 1.8508287230599405 No Hit CGTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT 7522 0.16941811566604045 No Hit CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT 6565 0.1478635907135809 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT 5970 0.1344623970388542 No Hit CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 5549 0.12498020790093839 TruSeq Adapter, Index 19 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 5400 0.12162427872861187 No Hit CGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 4654 0.10482210985239993 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15874220675541786 0.0 2 0.0 0.0 0.0 0.44759986873587104 0.0 3 0.0 0.0 0.0 0.7037541135470753 0.0 4 0.0 0.0 0.0 0.9955622904374263 0.0 5 0.0 0.0 0.0 1.6884828339718232 0.0 6 0.0 0.0 0.0 2.6704412236033086 0.0 7 0.0 0.0 0.0 3.3853667523817523 0.0 8 0.0 0.0 0.0 4.566293452807415 0.0 9 0.0 0.0 0.0 5.189798065408186 0.0 10 0.0 0.0 0.0 5.918124787861356 0.0 11 0.0 0.0 0.0 6.734156129086604 0.0 12 0.0 0.0 0.0 7.3517597118675795 0.0 13 0.0 0.0 0.0 7.6444462863265255 0.0 14 0.0 0.0 0.0 7.820283461147687 0.0 15 0.0 0.0 0.0 7.997945000149778 0.0 16 0.0 0.0 0.0 8.28612697169285 0.0 17 0.0 0.0 0.0 8.656405331377735 0.0 18 0.0 0.0 0.0 9.073081101096127 0.0 19 0.0 0.0 0.0 9.363650512184613 0.0 20 0.0 0.0 0.0 9.666540012248015 0.0 21 0.0 0.0 0.0 10.000713979562166 0.0 22 0.0 0.0 0.0 10.379213239568521 0.0 23 0.0 0.0 0.0 10.76196934933038 0.0 24 0.0 0.0 0.0 11.056705518116049 0.0 25 0.0 0.0 0.0 11.313512930350054 0.0 26 0.0 0.0 0.0 11.566468907090988 0.0 27 0.0 0.0 0.0 11.834087366323093 0.0 28 0.0 0.0 0.0 12.117989965096085 0.0 29 0.0 0.0 0.0 12.428086829824887 0.0 30 0.0 0.0 0.0 12.787734326628307 0.0 31 2.2523014579372568E-5 0.0 0.0 13.097696053269631 0.0 32 2.2523014579372568E-5 0.0 0.0 13.383715815413085 0.0 33 2.2523014579372568E-5 0.0 0.0 13.67502848598269 0.0 34 2.2523014579372568E-5 0.0 0.0 13.977467525754504 0.0 35 2.2523014579372568E-5 0.0 0.0 14.302632287236905 0.0 36 2.2523014579372568E-5 0.0 0.0 14.607841657801984 0.0 37 2.2523014579372568E-5 0.0 0.0 14.925889146677303 0.0 38 2.2523014579372568E-5 0.0 0.0 15.280851856448216 0.0 39 2.2523014579372568E-5 0.0 0.0 15.783880864063923 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGGAC 40 6.8230293E-9 45.000004 4 CGTTTTT 34605 0.0 43.784134 1 CGACGGT 960 0.0 42.656254 28 TACGGGA 2325 0.0 41.03226 4 CACGACG 1020 0.0 40.14706 26 ACGGGAT 2960 0.0 39.98311 5 GGCGATA 700 0.0 39.857143 8 TCACGAC 1055 0.0 39.668243 25 TACGACG 125 0.0 39.6 1 CGTTAGG 660 0.0 39.204548 2 AGGGATC 6265 0.0 39.07422 6 CGAGGGA 3235 0.0 39.01855 4 TTGCGAG 375 0.0 39.0 1 CTCACGA 1085 0.0 38.7788 24 TAGGGAT 8215 0.0 38.727936 5 TAACGGG 1205 0.0 38.65145 3 GGCACCG 760 0.0 38.486843 8 CGGGATT 2785 0.0 38.375225 6 GACGGTC 1075 0.0 38.093025 29 CGGTCTA 1085 0.0 37.94931 31 >>END_MODULE