SRR1547547_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547547_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2494963
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10491	0.42048719760573605	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	5550	0.22244818861041227	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3901	0.15635502410256186	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3404	0.1364348890143862	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2891	0.11587346185093726	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2642	0.10589335392949716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTCAA	20	7.034876E-4	45.000004	40
CGCAATC	40	6.8212103E-9	45.000004	20
TTCGATC	20	7.034876E-4	45.000004	34
ATCTCGC	25	3.8921236E-5	45.0	11
CGTGATA	25	3.8921236E-5	45.0	35
CGTCTAG	25	3.8921236E-5	45.0	20
TAAGTCG	35	1.212702E-7	45.0	33
TCGATCT	25	3.8921236E-5	45.0	35
ATCGTAC	50	2.1827873E-11	45.0	10
CCCGTCG	35	1.212702E-7	45.0	17
CTAACCG	35	1.212702E-7	45.0	2
TATTCGC	25	3.8921236E-5	45.0	18
CCGTTGT	25	3.8921236E-5	45.0	33
TACGTAA	35	1.212702E-7	45.0	41
CTTACGT	35	1.212702E-7	45.0	36
ACGCATG	60	0.0	44.999996	1
TACGACG	30	2.1665292E-6	44.999996	1
TTACCGT	30	2.1665292E-6	44.999996	38
ATCGCTA	30	2.1665292E-6	44.999996	10
TACCGAT	30	2.1665292E-6	44.999996	39