SRR1547545_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547545_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4368762
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	67452	1.5439614243119677	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	7033	0.16098382104587067	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	5080	0.11628008117631494	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	4699	0.10755907508809132	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCGA	25	3.892606E-5	45.000004	24
AACGTTC	20	7.0354587E-4	45.0	35
CGTTCGA	40	6.8230293E-9	45.0	30
CGGTCGC	20	7.0354587E-4	45.0	18
CGCACCG	35	1.2129749E-7	45.0	31
GCGTAAT	20	7.0354587E-4	45.0	31
ACGGTCG	20	7.0354587E-4	45.0	17
TACGATC	55	1.8189894E-12	44.999996	37
TCACGAC	1525	0.0	43.81967	25
CGTTTTT	24010	0.0	43.659935	1
CGACGGT	1450	0.0	43.60345	28
TCTACGG	290	0.0	43.448273	2
CGGTCTA	1445	0.0	43.442905	31
CACGACG	1510	0.0	43.21192	26
TCGCGAG	110	0.0	42.954544	1
CGCATCG	100	0.0	42.750004	21
TACGGGA	1855	0.0	42.452827	4
TGCGTAG	305	0.0	42.049183	1
CGCCGAC	115	0.0	41.086956	13
ACGGTCT	1545	0.0	40.92233	30