##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547544_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3301312 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.347232251904696 31.0 31.0 33.0 30.0 34.0 2 31.759445941492352 31.0 31.0 34.0 30.0 34.0 3 31.907806048019697 31.0 31.0 34.0 30.0 34.0 4 35.65229127086443 37.0 35.0 37.0 33.0 37.0 5 35.551151481592775 37.0 35.0 37.0 33.0 37.0 6 35.59447031967896 37.0 35.0 37.0 33.0 37.0 7 35.92257775090631 37.0 35.0 37.0 35.0 37.0 8 35.85168108921544 37.0 35.0 37.0 35.0 37.0 9 37.49185808551267 39.0 37.0 39.0 35.0 39.0 10 37.075426678847684 39.0 37.0 39.0 33.0 39.0 11 36.85031254240738 39.0 37.0 39.0 32.0 39.0 12 36.418092564410756 39.0 35.0 39.0 32.0 39.0 13 36.24068461266309 39.0 35.0 39.0 32.0 39.0 14 37.23041293885583 39.0 35.0 41.0 32.0 41.0 15 37.43934350948956 39.0 35.0 41.0 32.0 41.0 16 37.5275263289262 40.0 35.0 41.0 32.0 41.0 17 37.43446181396972 39.0 35.0 41.0 32.0 41.0 18 37.37237558885679 39.0 35.0 41.0 32.0 41.0 19 37.36332857966772 39.0 35.0 41.0 32.0 41.0 20 37.25081149555086 39.0 35.0 41.0 32.0 41.0 21 37.15369132029932 39.0 35.0 41.0 32.0 41.0 22 37.10837812360661 39.0 35.0 41.0 32.0 41.0 23 37.016620664753894 39.0 35.0 41.0 32.0 41.0 24 36.95521386648702 39.0 35.0 41.0 31.0 41.0 25 36.87566731045112 39.0 35.0 41.0 31.0 41.0 26 36.897857276137486 39.0 35.0 41.0 31.0 41.0 27 36.862540711086986 39.0 35.0 41.0 31.0 41.0 28 36.80877208818797 39.0 35.0 41.0 31.0 41.0 29 36.75379970145203 39.0 35.0 41.0 31.0 41.0 30 36.649340019967816 38.0 35.0 41.0 31.0 41.0 31 36.513681530252214 38.0 35.0 41.0 30.0 41.0 32 36.39861212754202 38.0 35.0 41.0 30.0 41.0 33 36.29808209584553 38.0 35.0 41.0 30.0 41.0 34 36.189700640230306 38.0 35.0 41.0 30.0 41.0 35 36.11821542465541 38.0 35.0 41.0 30.0 41.0 36 36.041465635480684 38.0 35.0 41.0 29.0 41.0 37 35.99459941986701 38.0 35.0 41.0 29.0 41.0 38 35.873830464978774 38.0 35.0 41.0 29.0 41.0 39 35.808998058953534 38.0 35.0 40.0 29.0 41.0 40 35.70724881501658 38.0 35.0 40.0 28.0 41.0 41 35.63242735009596 38.0 35.0 40.0 28.0 41.0 42 35.63162433602156 38.0 35.0 40.0 28.0 41.0 43 35.58844483647714 38.0 34.0 40.0 28.0 41.0 44 35.48936331979528 38.0 34.0 40.0 27.0 41.0 45 35.42128886939496 38.0 34.0 40.0 27.0 41.0 46 35.37524747736657 38.0 34.0 40.0 27.0 41.0 47 35.30776612449838 38.0 34.0 40.0 27.0 41.0 48 35.22450892251323 38.0 34.0 40.0 27.0 41.0 49 35.14545853284997 37.0 34.0 40.0 27.0 41.0 50 35.054994196246824 37.0 34.0 40.0 27.0 41.0 51 34.62905656902468 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 5.0 11 1.0 12 17.0 13 15.0 14 41.0 15 103.0 16 222.0 17 572.0 18 1137.0 19 2154.0 20 3875.0 21 6527.0 22 10031.0 23 14725.0 24 21544.0 25 30643.0 26 40118.0 27 47827.0 28 55252.0 29 64532.0 30 78190.0 31 96493.0 32 119540.0 33 153513.0 34 247703.0 35 331156.0 36 244959.0 37 316614.0 38 486712.0 39 926786.0 40 302.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.04885330438323 23.31921369443421 28.695773074462515 12.936159926720043 2 30.934670821782372 25.96943275885466 29.50790473605645 13.587991683306516 3 29.815752040400906 25.336623742318203 30.85264282806351 13.99498138921738 4 26.899487234166298 27.75302667545509 30.105303588391525 15.24218250198709 5 24.4865677645736 31.305371924858967 28.73772609192951 15.470334218637923 6 22.224921485760813 40.340658501832 26.38169309656282 11.052726915844367 7 86.15765489599286 4.212931101331834 7.244119913537405 2.3852940891378944 8 85.82920972025667 4.339820047302405 6.786726004691468 3.0442442277494526 9 80.41775512281177 6.488935308144156 8.833185109435279 4.260124459608786 10 39.78106280169823 35.475501861078264 14.125141761820755 10.618293575402749 11 32.435225752670455 23.521284870984626 26.927415524494503 17.116073851850416 12 31.17721075742008 21.80490665529341 28.805820231471607 18.2120623558149 13 25.478718763933855 27.193491557296007 28.780466675067366 18.547323003702772 14 17.861686505243977 32.08836365663106 30.254759319930987 19.795190518193976 15 17.636715342263923 29.05069257313456 35.307750373184966 18.004841711416553 16 22.869907479208265 26.92341711416552 33.08448277533296 17.122192631293256 17 22.251426099684004 27.00547539887172 27.4972798693368 23.245818632107476 18 23.370284299090784 27.117612634007326 30.502660760328016 19.00944230657387 19 24.612760017835335 28.988353721187217 26.551928445418067 19.846957815559392 20 25.908032927514878 28.526597910164202 27.311777862861796 18.253591299459124 21 24.124166392028382 28.656213044995443 29.46498240699455 17.754638155981624 22 23.371344483647714 23.844822906771608 30.414635151115675 22.369197458465 23 20.581786877459628 28.463138291685247 30.197509353856887 20.757565476998234 24 20.76571375259291 27.482619031463855 31.38709700870442 20.36457020723882 25 20.860039887172128 29.27530024426652 28.557949082061917 21.306710786499426 26 19.659032530097125 30.72511777135878 26.867621115483782 22.74822858306031 27 19.517997693038406 30.406456584533665 29.614226101622627 20.461319620805305 28 17.25147456526375 29.068746001589673 32.17623781090669 21.503541622239887 29 19.70637734331078 27.97369651823275 31.143587761471803 21.176338376984667 30 21.624493534691663 28.669601661400073 30.041692514975864 19.6642122889324 31 24.627420855708277 28.371174854118603 26.222029302289513 20.779374987883607 32 24.561780286140785 28.166559234631567 26.89330787274877 20.378352606478877 33 23.825466965860844 27.65364194598996 26.42924994668786 22.091641141461334 34 19.18216151639106 28.49909369365876 30.049659044646493 22.269085745303684 35 20.093829362386835 28.54416668282186 28.24149913731268 23.120504817478626 36 23.543033799895312 28.220507483085512 26.971579784037374 21.264878932981794 37 20.579363598472362 29.92319417249869 27.967608029777253 21.52983419925169 38 20.419154566426922 29.913955421359752 26.257560630440263 23.409329381773063 39 20.288236919140026 28.135935046430028 27.04906412965512 24.52676390477483 40 22.634213306709576 27.2972987709129 27.2958145125332 22.77267340984433 41 19.18912844347944 26.485136818331622 28.409462662117363 25.91627207607157 42 21.31516197196751 26.810249985460327 27.28318317081209 24.591404871760076 43 21.572817110288273 26.73100876257682 27.85416828218599 23.84200584494892 44 20.844652065603007 28.219810790376677 27.733882771455715 23.201654372564605 45 20.35733066126437 29.002560194250044 26.230541069732276 24.40956807475331 46 21.40942752457205 29.101248231006338 27.162382713297017 22.326941531124593 47 19.607659015567144 27.590394364422387 29.4215754221352 23.38037119787527 48 20.4856735746273 27.21542223213074 29.51468991722079 22.78421427602117 49 21.40370252796464 26.08187290386368 28.998016546148925 23.51640802202276 50 18.845416610123493 27.359486167923542 30.361171558459183 23.43392566349379 51 18.83787415427563 27.783408535757903 28.085954917317725 25.292762392648743 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2320.0 1 3711.0 2 5102.0 3 14648.0 4 24194.0 5 17360.0 6 10526.0 7 10823.5 8 11121.0 9 12240.0 10 13359.0 11 13585.0 12 13811.0 13 14019.5 14 14228.0 15 13257.5 16 12287.0 17 12108.5 18 11930.0 19 11644.5 20 11359.0 21 12877.5 22 14396.0 23 14468.5 24 14541.0 25 19387.5 26 30058.0 27 35882.0 28 40949.0 29 46016.0 30 56409.5 31 66803.0 32 76524.5 33 86246.0 34 98798.0 35 111350.0 36 122482.0 37 133614.0 38 139403.0 39 145192.0 40 172652.5 41 200113.0 42 209504.0 43 218895.0 44 231649.0 45 244403.0 46 247771.5 47 251140.0 48 272494.0 49 293848.0 50 289892.0 51 285936.0 52 270374.5 53 254813.0 54 221940.5 55 189068.0 56 174857.0 57 160646.0 58 144811.5 59 128977.0 60 113538.5 61 98100.0 62 82133.0 63 66166.0 64 54836.0 65 43506.0 66 33491.0 67 23476.0 68 18657.5 69 13839.0 70 11827.0 71 9815.0 72 7225.5 73 4636.0 74 3578.5 75 2016.0 76 1511.0 77 1067.0 78 623.0 79 540.0 80 457.0 81 301.0 82 145.0 83 119.0 84 93.0 85 64.5 86 36.0 87 26.0 88 16.0 89 14.0 90 12.0 91 7.5 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 1.5 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3301312.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.48433487015219 #Duplication Level Percentage of deduplicated Percentage of total 1 74.69564207893401 13.060036194491131 2 10.453846270804748 3.6555709775968377 3 3.986402327448968 2.0909877966081547 4 2.063307601745337 1.4430224419618434 5 1.2397824937575868 1.0838386143505008 6 0.8349058849960955 0.8758664446999502 7 0.5529454940745392 0.6767518928338697 8 0.4200308780297695 0.5875168421821233 9 0.3442734733626075 0.5417453425664024 >10 2.8294363220368766 10.909661588982422 >50 0.9937204077886471 12.764508644816837 >100 1.572161271814008 49.254689041189636 >500 0.008795776108279637 1.0327191580470871 >1k 0.004573803576305411 1.5877411144135303 >5k 0.0 0.0 >10k+ 1.7591552216559273E-4 0.4353439052596639 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14154 0.4287386348215497 No Hit CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT 4510 0.13661235290696547 RNA PCR Primer, Index 16 (96% over 26bp) GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 3702 0.1121372351356067 Illumina PCR Primer Index 7 (95% over 22bp) GAATGATACCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCG 3572 0.10819940678130392 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3444 0.10432216040168273 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.029098734079057E-5 0.0 0.0 0.15178813756470155 0.0 2 3.029098734079057E-5 0.0 0.0 0.46205872089641936 0.0 3 3.029098734079057E-5 0.0 0.0 0.6596165403330555 0.0 4 3.029098734079057E-5 0.0 0.0 0.9542266832095846 0.0 5 3.029098734079057E-5 0.0 0.0 1.6246268150359615 0.0 6 3.029098734079057E-5 0.0 0.0 2.1985198611945798 0.0 7 3.029098734079057E-5 0.0 0.0 2.6046917104472405 0.0 8 3.029098734079057E-5 0.0 0.0 3.478677568191071 0.0 9 3.029098734079057E-5 0.0 0.0 3.7682291161816877 0.0 10 3.029098734079057E-5 0.0 0.0 4.380864335149177 0.0 11 3.029098734079057E-5 0.0 0.0 5.074346199329236 0.0 12 3.029098734079057E-5 0.0 0.0 5.7434741096873 0.0 13 3.029098734079057E-5 0.0 0.0 5.982106507958048 0.0 14 3.029098734079057E-5 0.0 0.0 6.1073597406122175 0.0 15 3.029098734079057E-5 0.0 0.0 6.283562413973596 0.0 16 3.029098734079057E-5 0.0 0.0 6.60634317507706 0.0 17 3.029098734079057E-5 0.0 0.0 6.978255917647287 0.0 18 3.029098734079057E-5 0.0 0.0 7.407206589380222 0.0 19 3.029098734079057E-5 0.0 0.0 7.6848234883585675 0.0 20 3.029098734079057E-5 0.0 0.0 7.967135490374736 0.0 21 3.029098734079057E-5 0.0 0.0 8.293854079832503 0.0 22 3.029098734079057E-5 0.0 0.0 8.641715778454142 0.0 23 3.029098734079057E-5 0.0 0.0 8.99684731403757 0.0 24 3.029098734079057E-5 0.0 0.0 9.270920167497044 0.0 25 3.029098734079057E-5 0.0 0.0 9.511794098831011 0.0 26 3.029098734079057E-5 0.0 0.0 9.751335226721983 0.0 27 3.029098734079057E-5 0.0 0.0 10.014139832890681 0.0 28 3.029098734079057E-5 0.0 0.0 10.274369705135413 0.0 29 3.029098734079057E-5 0.0 0.0 10.570252069480254 0.0 30 3.029098734079057E-5 0.0 0.0 10.901968671849252 0.0 31 3.029098734079057E-5 0.0 0.0 11.18573464125778 0.0 32 6.058197468158114E-5 0.0 0.0 11.452143874920031 0.0 33 6.058197468158114E-5 0.0 0.0 11.72870058934145 0.0 34 6.058197468158114E-5 0.0 0.0 12.027854380319097 0.0 35 6.058197468158114E-5 0.0 0.0 12.358813708004575 0.0 36 6.058197468158114E-5 0.0 0.0 12.639399123742319 0.0 37 6.058197468158114E-5 0.0 0.0 12.941703177403408 0.0 38 6.058197468158114E-5 0.0 0.0 13.300348467518369 0.0 39 6.058197468158114E-5 0.0 0.0 13.83531759494407 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCG 135 0.0 45.000004 1 CCGTTCG 35 1.2128476E-7 45.000004 43 CGCGAAA 50 2.1827873E-11 45.0 29 CGCTAAC 20 7.0352084E-4 45.0 26 TAATCCG 20 7.0352084E-4 45.0 1 CGGTCTA 1355 0.0 43.33948 31 CGACGGT 1380 0.0 42.717392 28 CACGACG 1405 0.0 42.11744 26 GTTTACG 150 0.0 42.0 1 TACGTAG 150 0.0 42.0 1 ACGGTCT 1415 0.0 41.819786 30 CTCACGA 1435 0.0 41.550526 24 TATAGCG 190 0.0 41.44737 1 TCTCACG 1445 0.0 41.107265 23 CGTAAGT 55 6.184564E-11 40.909092 24 AGAATCG 50 1.0822987E-9 40.5 13 CGTTTTT 8120 0.0 40.40025 1 GACGGTC 1460 0.0 40.37671 29 CGACTAG 45 1.9301297E-8 40.0 17 TACGGGA 1445 0.0 39.86159 4 >>END_MODULE