SRR1547543_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547543_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1468628
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6894	0.4694177150374363	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5797	0.39472214883551177	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2062	0.1404031517852036	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1886	0.12841917762700972	No Hit
CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT	1564	0.10649395217849586	Illumina Single End Adapter 2 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTGC	45	3.8562575E-10	45.000004	16
GTCGCAC	45	3.8562575E-10	45.000004	13
TCGCACC	45	3.8562575E-10	45.000004	26
GGTCGAT	35	1.2122291E-7	45.000004	8
CGACGGT	720	0.0	45.000004	28
GTTTACG	90	0.0	45.000004	1
TAGGTGC	45	3.8562575E-10	45.000004	5
CGTTGAT	35	1.2122291E-7	45.000004	25
CTCCCGA	35	1.2122291E-7	45.000004	43
GCGCATC	45	3.8562575E-10	45.000004	21
ATCGTCC	65	0.0	45.000004	22
AGTGCGC	35	1.2122291E-7	45.000004	35
AGGTTCC	45	3.8562575E-10	45.000004	24
CGGATAG	45	3.8562575E-10	45.000004	26
TACGAGT	45	3.8562575E-10	45.000004	33
TCGTCCT	65	0.0	45.000004	23
TCGTCCA	35	1.2122291E-7	45.000004	21
TTGCGCG	65	0.0	45.000004	15
CGGTGAT	45	3.8562575E-10	45.000004	32
TCTCCCG	35	1.2122291E-7	45.000004	42