##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547543_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1468628 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.387610068717198 31.0 31.0 33.0 30.0 34.0 2 31.786032950481673 31.0 31.0 34.0 30.0 34.0 3 31.913786200453757 31.0 31.0 34.0 30.0 34.0 4 35.64306277695918 37.0 35.0 37.0 33.0 37.0 5 35.53100376678097 37.0 35.0 37.0 33.0 37.0 6 35.59006637487505 37.0 35.0 37.0 33.0 37.0 7 35.956692232478204 37.0 35.0 37.0 35.0 37.0 8 35.91531688078942 37.0 35.0 37.0 35.0 37.0 9 37.5996923659361 39.0 37.0 39.0 35.0 39.0 10 37.1250602603246 39.0 37.0 39.0 33.0 39.0 11 36.80708797598847 39.0 35.0 39.0 32.0 39.0 12 36.01758784389239 37.0 35.0 39.0 32.0 39.0 13 35.638494567718986 37.0 35.0 39.0 31.0 39.0 14 36.67607590213451 38.0 35.0 41.0 31.0 41.0 15 36.98743316891684 38.0 35.0 41.0 32.0 41.0 16 37.13816568933726 38.0 35.0 41.0 32.0 41.0 17 37.09210705502006 38.0 35.0 41.0 32.0 41.0 18 37.038207088520714 38.0 35.0 41.0 32.0 41.0 19 36.97760835282999 38.0 35.0 41.0 32.0 41.0 20 36.826469330558865 38.0 35.0 41.0 32.0 41.0 21 36.691669367600234 38.0 35.0 41.0 32.0 41.0 22 36.60812064048895 38.0 35.0 41.0 31.0 41.0 23 36.581277219282214 38.0 35.0 40.0 31.0 41.0 24 36.49190741290511 38.0 35.0 40.0 31.0 41.0 25 36.40578689770316 38.0 35.0 40.0 31.0 41.0 26 36.37756055311488 38.0 35.0 40.0 31.0 41.0 27 36.347700030232296 38.0 35.0 40.0 31.0 41.0 28 36.326587127577575 38.0 35.0 40.0 31.0 41.0 29 36.32208973273014 38.0 35.0 40.0 31.0 41.0 30 36.264047124254745 38.0 35.0 40.0 31.0 41.0 31 36.07676756809757 37.0 35.0 40.0 30.0 41.0 32 35.87372363866139 37.0 35.0 40.0 30.0 41.0 33 35.769326201052955 38.0 35.0 40.0 30.0 41.0 34 35.70120207431698 37.0 35.0 40.0 30.0 41.0 35 35.589446068030846 37.0 35.0 40.0 29.0 41.0 36 35.482690647325256 37.0 35.0 40.0 29.0 41.0 37 35.43710456289816 37.0 34.0 40.0 29.0 41.0 38 35.36090895720359 37.0 34.0 40.0 29.0 41.0 39 35.31562179122283 37.0 34.0 40.0 28.0 41.0 40 35.211344874263595 37.0 34.0 40.0 27.0 41.0 41 35.19783430521548 37.0 34.0 40.0 28.0 41.0 42 35.16530258172934 37.0 34.0 40.0 27.0 41.0 43 35.080522773636346 37.0 34.0 40.0 27.0 41.0 44 34.95294247420041 36.0 34.0 40.0 27.0 41.0 45 34.87144055540273 36.0 34.0 40.0 27.0 41.0 46 34.77283696075521 36.0 34.0 40.0 26.0 41.0 47 34.70683726580182 36.0 34.0 40.0 26.0 41.0 48 34.65554381368189 36.0 34.0 40.0 26.0 41.0 49 34.62824282255275 36.0 34.0 40.0 26.0 41.0 50 34.50327584657245 36.0 34.0 40.0 26.0 41.0 51 34.02086777591058 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 2.0 12 0.0 13 6.0 14 3.0 15 20.0 16 78.0 17 204.0 18 478.0 19 996.0 20 1746.0 21 2980.0 22 4775.0 23 7131.0 24 10577.0 25 15281.0 26 20017.0 27 23282.0 28 25870.0 29 30182.0 30 36221.0 31 44385.0 32 56188.0 33 74641.0 34 134506.0 35 222182.0 36 100841.0 37 121675.0 38 185916.0 39 348292.0 40 149.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.46363272387562 24.375539619290933 31.36893753898196 11.791890117851493 2 30.554640113085135 26.55880182047462 29.58754701667134 13.2990110497689 3 28.772296320102846 25.93522661967496 31.497969533469334 13.794507526752861 4 26.80801401035524 27.440645282535808 31.536849358721202 14.214491348387748 5 23.80575612067862 32.44722285017036 30.164275773034422 13.582745256116594 6 21.46731507229877 40.824769785132794 26.562546812399056 11.145368330169383 7 87.08570175701404 4.875366668754784 6.300574413670446 1.7383571605607413 8 87.23897406286683 3.999174739961379 6.099774755758435 2.662076441413346 9 82.71114264469968 6.048638593299324 8.143178531255021 3.0970402307459755 10 49.27558238028963 26.926287664405145 13.784770547749329 10.013359407555896 11 41.74365462186476 23.531418439523147 20.86968245192111 13.85524448669098 12 38.75058898509357 23.36936242533848 23.593244851657467 14.286803737910486 13 21.867620663639805 40.63166438335644 23.408991248975234 14.091723704028523 14 15.856840534158412 41.2670192860275 26.928738931846596 15.947401247967491 15 14.045353894927784 28.429323150586804 43.79373129206307 13.731591662422343 16 15.646031534193819 24.023850832205294 41.49001653243708 18.84010110116381 17 17.04325397581961 26.00665382928829 26.18818380148002 30.761908393412085 18 21.443891850080483 27.968552962356704 31.73975983026335 18.847795357299464 19 26.844578749690186 30.665832327859743 23.23849198027002 19.251096942180048 20 28.59430706754876 27.112175445381677 24.900519396334538 19.392998090735027 21 20.858651748434593 30.90850780456317 27.401901638808468 20.830938808193768 22 21.64544050637738 26.049619100275905 26.181919451351877 26.12302094199484 23 18.45409456989789 31.448603730829046 26.135345369964348 23.961956329308716 24 20.075948436227552 26.751090133103823 35.28633527346612 17.886626157202503 25 16.62681087382237 29.894363991426008 31.55148887260763 21.92733626214399 26 15.684911359445685 38.54543151839676 24.81383985597442 20.955817266183132 27 16.909455627973863 37.0153639995969 29.40220396179291 16.672976410636323 28 14.938977058860377 31.054085854280324 36.385252085620046 17.62168500123925 29 15.029537772669457 28.439877218737486 36.210395008130035 20.32019000046302 30 19.240747146316153 34.28267743771738 29.18227079968515 17.29430461628132 31 28.880832995149213 30.571594712888494 22.90096607173498 17.646606220227316 32 26.122748578945792 32.83615728421356 24.741936011025256 16.299158125815385 33 25.15136576450946 31.342314050937336 23.831902973387407 19.674417211165796 34 19.022924797838527 30.84606857556849 27.595415585158396 22.535591041434593 35 19.783021976974428 30.12798339674853 28.391124232957566 21.69787039331948 36 25.743346851619336 29.706365396819344 27.451539804497806 17.098747947063515 37 19.081210490335195 34.64675874353478 28.192163025626638 18.07986774050338 38 19.373660314252486 34.562939015189684 24.075940265336083 21.987460405221746 39 19.641733645279814 31.933341867375535 28.56945393932296 19.855470548021692 40 23.462510588113535 29.167563195036454 25.949661861274603 21.42026435557541 41 17.29927524192648 27.023793635964992 27.942474200410178 27.734456921698346 42 21.38165689337259 28.656269661207602 24.065726650996712 25.896346794423092 43 21.76834433226113 29.549756643615677 25.53212930708117 23.14976971704203 44 18.856783337918113 32.936046432452606 27.089637403072803 21.117532826556488 45 18.212576636152928 38.47005504457221 22.123233385173098 21.19413493410176 46 22.413231941648938 34.68400439049235 23.92675340521902 18.97601026263969 47 21.151169663114146 30.42744656917885 26.794532039427278 21.62685172827973 48 21.988958401991518 26.998940507739196 30.563355730654735 20.448745359614552 49 20.207159335107324 27.00506867634282 29.827022227548433 22.960749761001427 50 18.836151836952585 31.940355215888573 28.287626274318615 20.935866672840227 51 16.31059737387548 34.53536225647339 26.018773984971006 23.135266384680122 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2385.0 1 2611.0 2 2837.0 3 6647.0 4 10457.0 5 7705.5 6 4954.0 7 5390.0 8 5826.0 9 6931.5 10 8037.0 11 8315.0 12 8593.0 13 8783.0 14 8973.0 15 8543.0 16 8113.0 17 7229.5 18 6346.0 19 6462.0 20 6578.0 21 7000.5 22 7423.0 23 6194.5 24 4966.0 25 7380.0 26 12001.5 27 14209.0 28 16429.5 29 18650.0 30 23832.0 31 29014.0 32 31467.0 33 33920.0 34 40544.0 35 47168.0 36 47962.0 37 48756.0 38 57258.0 39 65760.0 40 86635.0 41 107510.0 42 134105.0 43 160700.0 44 155451.5 45 150203.0 46 152703.5 47 155204.0 48 143280.5 49 131357.0 50 120121.5 51 108886.0 52 98437.0 53 87988.0 54 73975.5 55 59963.0 56 53925.5 57 47888.0 58 43477.0 59 39066.0 60 33467.5 61 27869.0 62 22526.0 63 17183.0 64 13649.5 65 10116.0 66 7619.0 67 5122.0 68 3851.5 69 2581.0 70 2322.0 71 2063.0 72 1417.5 73 772.0 74 661.0 75 487.5 76 425.0 77 359.0 78 293.0 79 189.0 80 85.0 81 56.0 82 27.0 83 17.5 84 8.0 85 7.5 86 7.0 87 3.5 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1468628.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.98258430739446 #Duplication Level Percentage of deduplicated Percentage of total 1 75.08791602849865 14.253626964775314 2 11.00008163088189 4.176199538928733 3 4.200145118689168 2.3918882645642534 4 2.091122623574744 1.5877964599642989 5 1.2879908242088687 1.2224697203847663 6 0.8578403416954585 0.9770415965110867 7 0.5898723596090961 0.7838111257816959 8 0.43738525748263596 0.6642162019980457 9 0.35554803250501266 0.6074298452119167 >10 2.376950087819898 9.248913242443042 >50 0.47814696638178567 6.492813051472468 >100 1.2177294063074295 54.08240993490991 >500 0.01599883364512597 1.9311128307030838 >1k 0.0025452689889973136 0.704306073503977 >5k 7.272197111420895E-4 0.87596514884741 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6894 0.4694177150374363 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5797 0.39472214883551177 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2062 0.1404031517852036 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1886 0.12841917762700972 No Hit CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT 1564 0.10649395217849586 Illumina Single End Adapter 2 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12787445152890997 0.0 2 0.0 0.0 0.0 0.4206647292575111 0.0 3 0.0 0.0 0.0 0.6074376901434536 0.0 4 0.0 0.0 0.0 0.9108501267849993 0.0 5 0.0 0.0 0.0 1.4881917000084433 0.0 6 0.0 0.0 0.0 2.027879081700744 0.0 7 0.0 0.0 0.0 2.3426626756401214 0.0 8 0.0 0.0 0.0 3.1076623896589197 0.0 9 0.0 0.0 0.0 3.317109574378263 0.0 10 0.0 0.0 0.0 3.796672812992807 0.0 11 0.0 0.0 0.0 4.569502964671789 0.0 12 0.0 0.0 0.0 5.113480064386625 0.0 13 0.0 0.0 0.0 5.330417232954839 0.0 14 0.0 0.0 0.0 5.4200927668545065 0.0 15 0.0 0.0 0.0 5.572547983560167 0.0 16 0.0 0.0 0.0 5.96012060235812 0.0 17 0.0 0.0 0.0 6.41060908548659 0.0 18 0.0 0.0 0.0 6.985839845079898 0.0 19 0.0 0.0 0.0 7.284894472936646 0.0 20 0.0 0.0 0.0 7.575642027797373 0.0 21 0.0 0.0 0.0 7.983369512225016 0.0 22 0.0 0.0 0.0 8.395454805437456 0.0 23 0.0 0.0 0.0 8.907701609937982 0.0 24 0.0 0.0 0.0 9.235354357944967 0.0 25 0.0 0.0 0.0 9.5384263407752 0.0 26 0.0 0.0 0.0 9.812287386594836 0.0 27 0.0 0.0 0.0 10.096974863614204 0.0 28 0.0 0.0 0.0 10.42639797144001 0.0 29 0.0 0.0 0.0 10.762357792443014 0.0 30 0.0 0.0 0.0 11.149385685142867 0.0 31 0.0 0.0 0.0 11.52449769444679 0.0 32 0.0 0.0 0.0 11.867675136249614 0.0 33 0.0 0.0 0.0 12.222904642972898 0.0 34 0.0 0.0 0.0 12.571393164232195 0.0 35 0.0 0.0 0.0 12.939628006547608 0.0 36 0.0 0.0 0.0 13.291657247444554 0.0 37 0.0 0.0 0.0 13.641099039375526 0.0 38 0.0 0.0 0.0 13.997417998295008 0.0 39 0.0 0.0 0.0 14.385194889379747 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTGC 45 3.8562575E-10 45.000004 16 GTCGCAC 45 3.8562575E-10 45.000004 13 TCGCACC 45 3.8562575E-10 45.000004 26 GGTCGAT 35 1.2122291E-7 45.000004 8 CGACGGT 720 0.0 45.000004 28 GTTTACG 90 0.0 45.000004 1 TAGGTGC 45 3.8562575E-10 45.000004 5 CGTTGAT 35 1.2122291E-7 45.000004 25 CTCCCGA 35 1.2122291E-7 45.000004 43 GCGCATC 45 3.8562575E-10 45.000004 21 ATCGTCC 65 0.0 45.000004 22 AGTGCGC 35 1.2122291E-7 45.000004 35 AGGTTCC 45 3.8562575E-10 45.000004 24 CGGATAG 45 3.8562575E-10 45.000004 26 TACGAGT 45 3.8562575E-10 45.000004 33 TCGTCCT 65 0.0 45.000004 23 TCGTCCA 35 1.2122291E-7 45.000004 21 TTGCGCG 65 0.0 45.000004 15 CGGTGAT 45 3.8562575E-10 45.000004 32 TCTCCCG 35 1.2122291E-7 45.000004 42 >>END_MODULE