SRR1547542_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547542_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2518483
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12579	0.4994673380761355	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4467	0.17736867789061905	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3434	0.13635192296314885	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT	3266	0.1296812406516145	No Hit
ATGCTGGGGAAACTTATGTCTTTTAGAAAGACAGTGCCTCTGTATGCTTTG	3034	0.12046934603092416	No Hit
GTATTTGGGATTGGTTCTTTTTTTTATAGAGTGTAAACCAAGTTTTATATT	2770	0.10998684525565589	No Hit
GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	2608	0.10355440159810489	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCGA	20	7.034888E-4	45.000004	34
ACCGGTC	20	7.034888E-4	45.000004	12
ACGTTAC	45	3.8562575E-10	45.000004	30
GACCGTA	20	7.034888E-4	45.000004	9
CGGATAC	40	6.8212103E-9	45.000004	32
TCGAATA	45	3.8562575E-10	45.000004	9
GCGTACC	20	7.034888E-4	45.000004	14
TCGCGCG	20	7.034888E-4	45.000004	2
CTTACCG	65	0.0	45.000004	1
TGTCACG	50	2.1827873E-11	45.0	1
GTCGCGC	25	3.892134E-5	45.0	22
ATTAGCG	110	0.0	45.0	1
GGTCGAC	35	1.212702E-7	45.0	9
CATTGCG	25	3.892134E-5	45.0	1
CCGGATA	25	3.892134E-5	45.0	10
TCTACGC	25	3.892134E-5	45.0	32
TTGCGTA	55	1.8189894E-12	45.0	14
AGTTCGG	50	2.1827873E-11	45.0	2
CGTCGGA	35	1.212702E-7	45.0	17
TAATGCG	165	0.0	45.0	1