##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547540_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2901554 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.359262312540107 31.0 31.0 33.0 30.0 34.0 2 31.775864588423996 31.0 31.0 34.0 30.0 34.0 3 31.929467795533014 31.0 31.0 34.0 30.0 34.0 4 35.66285169946863 37.0 35.0 37.0 33.0 37.0 5 35.55839767241967 37.0 35.0 37.0 33.0 37.0 6 35.59540163650237 37.0 35.0 37.0 33.0 37.0 7 35.932963853162825 37.0 35.0 37.0 35.0 37.0 8 35.87349020559328 37.0 35.0 37.0 35.0 37.0 9 37.496906485283404 39.0 37.0 39.0 35.0 39.0 10 37.09055251082696 39.0 37.0 39.0 33.0 39.0 11 36.87820526517859 39.0 37.0 39.0 32.0 39.0 12 36.525727248226296 39.0 35.0 39.0 32.0 39.0 13 36.38886093451992 39.0 35.0 39.0 32.0 39.0 14 37.422784824959315 40.0 36.0 41.0 32.0 41.0 15 37.622608092077556 40.0 36.0 41.0 32.0 41.0 16 37.68471653465694 40.0 36.0 41.0 33.0 41.0 17 37.614233614125396 40.0 36.0 41.0 32.0 41.0 18 37.52857882362348 39.0 36.0 41.0 32.0 41.0 19 37.517688107820845 39.0 36.0 41.0 32.0 41.0 20 37.41271539319965 39.0 35.0 41.0 32.0 41.0 21 37.2754761758699 39.0 35.0 41.0 32.0 41.0 22 37.23660734902745 39.0 35.0 41.0 32.0 41.0 23 37.14338730211466 39.0 35.0 41.0 32.0 41.0 24 37.078601328805185 39.0 35.0 41.0 31.0 41.0 25 36.99231032750037 39.0 35.0 41.0 31.0 41.0 26 36.99671968882881 39.0 35.0 41.0 31.0 41.0 27 36.97705402001824 39.0 35.0 41.0 31.0 41.0 28 36.92275656424109 39.0 35.0 41.0 31.0 41.0 29 36.879434951064155 39.0 35.0 41.0 31.0 41.0 30 36.78640170060595 39.0 35.0 41.0 31.0 41.0 31 36.665719473082355 39.0 35.0 41.0 30.0 41.0 32 36.56208121578988 39.0 35.0 41.0 30.0 41.0 33 36.47649742172643 39.0 35.0 41.0 30.0 41.0 34 36.38429028031186 39.0 35.0 41.0 30.0 41.0 35 36.2879119258163 39.0 35.0 41.0 30.0 41.0 36 36.22883427294477 39.0 35.0 41.0 30.0 41.0 37 36.19100075338939 39.0 35.0 41.0 30.0 41.0 38 36.05814091345534 39.0 35.0 41.0 29.0 41.0 39 35.984212942443946 38.0 35.0 41.0 29.0 41.0 40 35.895024872878466 38.0 35.0 41.0 29.0 41.0 41 35.82634374545502 38.0 35.0 41.0 28.0 41.0 42 35.807225024934915 38.0 35.0 40.0 28.0 41.0 43 35.78432832888859 38.0 35.0 40.0 28.0 41.0 44 35.67379514563575 38.0 35.0 40.0 28.0 41.0 45 35.615375071427245 38.0 34.0 40.0 28.0 41.0 46 35.58720878536123 38.0 34.0 40.0 28.0 41.0 47 35.510146631770425 38.0 34.0 40.0 28.0 41.0 48 35.416620197314955 38.0 34.0 40.0 27.0 41.0 49 35.35675675861969 38.0 34.0 40.0 27.0 41.0 50 35.26569589950764 38.0 34.0 40.0 27.0 41.0 51 34.84419590329872 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 11.0 11 4.0 12 4.0 13 24.0 14 28.0 15 72.0 16 220.0 17 454.0 18 1101.0 19 2023.0 20 3372.0 21 5582.0 22 8314.0 23 12333.0 24 17852.0 25 25903.0 26 34471.0 27 42191.0 28 47079.0 29 55103.0 30 66162.0 31 80578.0 32 99422.0 33 128099.0 34 201874.0 35 265346.0 36 218461.0 37 284520.0 38 437183.0 39 863442.0 40 323.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.57447285144443 24.13065550391273 28.225495717122616 13.069375927520218 2 31.567325646877503 25.192707080412774 29.105920482610355 14.134046790099376 3 30.410876378657782 25.05619402568417 30.45264709876156 14.08028249689649 4 27.744132971504236 26.773618550611154 29.8383555846281 15.643892893256512 5 24.253520699597527 31.191113451619373 28.51730486491032 16.03806098387278 6 22.765042456559485 39.888004841543534 26.135787926056175 11.211164775840809 7 86.15173110684826 4.1570482575888645 7.2635215474190735 2.4276990881438016 8 85.94256732771474 3.7221778398747705 7.154959032297866 3.180295800112629 9 79.74850717925635 6.920395071055027 9.28454200748978 4.046555742198835 10 38.17992013934602 35.65341193029666 14.835739744978035 11.330928185379282 11 30.045796149235894 23.89560904260269 28.605774698661474 17.452820109499946 12 29.347446230537155 22.42953258839918 30.15966616509636 18.063355015967307 13 25.341834065469744 25.793109485468825 30.52995050238596 18.33510594667547 14 18.765254756589055 29.97128435314318 31.60778672394172 19.655674166326044 15 17.706442823397392 28.909094919481078 35.62832192680198 17.756140330319546 16 22.76735156402397 26.729676580204952 33.32035178390614 17.18262007186494 17 23.168378048452656 26.101220242669964 28.425560923560273 22.304840785317108 18 22.761044598859783 26.834206773335943 31.011795748071552 19.39295287973272 19 24.287019989977786 28.592264696779722 27.762295652605467 19.358419660637026 20 25.164722076514863 28.059619086875514 28.427180745214457 18.34847809139516 21 24.451483584313785 26.584340667104595 31.193491487664886 17.770684260916735 22 23.374474505730376 23.740416342415134 31.292645251475587 21.5924639003789 23 20.484781603237437 27.18384700060726 31.153754160701475 21.17761723545383 24 20.450524098465856 27.175368785140652 32.40680683523381 19.967300281159684 25 21.490656386198566 27.643290457458313 29.64845734389227 21.217595812450845 26 19.80997079496022 30.614698192761537 27.798241907612265 21.777089104665983 27 19.364381982896063 29.241813180109695 31.55478064513016 19.839024191864084 28 18.164748958661463 28.11207373703884 32.82158457157785 20.901592732721845 29 19.71026560250128 26.898999639503522 32.447578090912664 20.943156667082537 30 21.12647222833006 27.15855021136949 31.49274492220376 20.22223263809669 31 23.19998180285461 26.462716185878328 29.264869790464004 21.07243222080306 32 23.03679338726765 27.827777804583338 28.998012789008925 20.13741601914009 33 22.40168544166333 27.023967156909713 29.573945547799557 21.0004018536274 34 19.27601554201645 27.21669146946774 31.388524907687398 22.11876808082841 35 19.824445796976377 26.808978912679205 30.796945361003104 22.56962992934131 36 22.18866166199216 27.96098228742253 29.30860497512712 20.541751075458187 37 20.014137251969117 29.171781741783885 29.963943459263554 20.850137546983444 38 20.432292488783595 29.185774243732844 28.44503324770106 21.936900019782502 39 19.90995170174327 27.83939227048678 29.31518765461542 22.935468373154524 40 21.85422018683781 27.14945163867362 29.070456727670756 21.92587144681781 41 19.034662115542222 25.6845125060571 29.996374356637855 25.28445102176282 42 20.07475993898442 27.408175067567242 29.64718216514323 22.86988282830511 43 20.335413368146863 26.395820997989354 30.379686195742007 22.88907943812178 44 20.245323712741516 27.632985634594426 29.75281521557069 22.368875437093365 45 19.59501701502023 28.343811626459477 28.70758221284181 23.353589145678487 46 21.153595624965106 27.683303498745843 29.291028186964642 21.87207268932441 47 19.944002420771767 27.15599985387141 31.01693092735824 21.88306679799859 48 19.587400406816485 27.2849652289773 30.970025027967772 22.157609336238444 49 20.75453360509575 25.936480934009843 31.062320397966054 22.246665062928347 50 19.19385267342948 27.152863603434575 31.442702772376457 22.21058095075949 51 19.0207385421743 28.050451585598612 28.989810287866437 23.93899958436066 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1927.0 1 3473.0 2 5019.0 3 15425.5 4 25832.0 5 18025.0 6 10218.0 7 10032.0 8 9846.0 9 10512.5 10 11179.0 11 11372.0 12 11565.0 13 11372.0 14 11179.0 15 11300.5 16 11422.0 17 10701.0 18 9980.0 19 10656.5 20 11333.0 21 12499.0 22 13665.0 23 15058.0 24 16451.0 25 20719.0 26 30104.5 27 35222.0 28 41950.0 29 48678.0 30 58891.0 31 69104.0 32 74657.5 33 80211.0 34 96508.5 35 112806.0 36 117800.0 37 122794.0 38 131173.0 39 139552.0 40 158367.5 41 177183.0 42 193512.0 43 209841.0 44 226690.0 45 243539.0 46 251192.5 47 258846.0 48 253042.0 49 247238.0 50 224289.0 51 201340.0 52 183119.5 53 164899.0 54 151764.5 55 138630.0 56 132242.0 57 125854.0 58 115386.5 59 104919.0 60 96221.0 61 87523.0 62 74538.5 63 61554.0 64 49493.5 65 37433.0 66 30450.0 67 23467.0 68 19691.5 69 15916.0 70 12606.0 71 9296.0 72 7107.0 73 4918.0 74 3752.5 75 2183.0 76 1779.0 77 1418.0 78 1057.0 79 696.5 80 336.0 81 293.0 82 250.0 83 161.5 84 73.0 85 64.0 86 55.0 87 38.0 88 21.0 89 16.0 90 11.0 91 10.0 92 9.0 93 7.5 94 6.0 95 3.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2901554.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.514584918079887 #Duplication Level Percentage of deduplicated Percentage of total 1 76.20219757762268 14.108520579951966 2 9.493377423105503 3.5153188491893848 3 3.4165559416273923 1.8976834532589224 4 1.7013138167271717 1.259964765283913 5 1.0739385110758612 0.9941762880055157 6 0.6882935493601846 0.7646081620917449 7 0.511504796661145 0.6629209295651569 8 0.40182839014990246 0.5951748681540564 9 0.30466133616381474 0.5076610361694568 >10 3.249518656133213 14.42886375637239 >50 1.5428914489112477 20.86710574709938 >100 1.4040839289888627 38.08500988550001 >500 0.007186840230252957 0.8999850449301935 >1k 0.0024586558682444326 0.8518728570952356 >5k 0.0 0.0 >10k+ 1.8912737448034098E-4 0.5611337773327503 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16025 0.5522902554975713 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 3386 0.11669608768266936 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.892858102933807E-5 0.0 0.0 0.12786251780942212 0.0 2 6.892858102933807E-5 0.0 0.0 0.3666655867855639 0.0 3 6.892858102933807E-5 0.0 0.0 0.5349202530781781 0.0 4 6.892858102933807E-5 0.0 0.0 0.765279570878226 0.0 5 6.892858102933807E-5 0.0 0.0 1.2797624996812054 0.0 6 6.892858102933807E-5 0.0 0.0 1.7962098930435209 0.0 7 6.892858102933807E-5 0.0 0.0 2.118933509422882 0.0 8 6.892858102933807E-5 0.0 0.0 2.8871080807043397 0.0 9 6.892858102933807E-5 0.0 0.0 3.1514147246613367 0.0 10 6.892858102933807E-5 0.0 0.0 3.614166753401798 0.0 11 6.892858102933807E-5 0.0 0.0 4.206642371639473 0.0 12 6.892858102933807E-5 0.0 0.0 4.702411190692987 0.0 13 6.892858102933807E-5 0.0 0.0 4.906439790539828 0.0 14 6.892858102933807E-5 0.0 0.0 5.005421232897957 0.0 15 6.892858102933807E-5 0.0 0.0 5.146104466778836 0.0 16 6.892858102933807E-5 0.0 0.0 5.422301290963394 0.0 17 6.892858102933807E-5 0.0 0.0 5.738993656502688 0.0 18 6.892858102933807E-5 0.0 0.0 6.110691029703394 0.0 19 6.892858102933807E-5 0.0 0.0 6.347529634120199 0.0 20 6.892858102933807E-5 0.0 0.0 6.589124310628029 0.0 21 6.892858102933807E-5 0.0 0.0 6.895442924722407 0.0 22 6.892858102933807E-5 0.0 0.0 7.21692582664324 0.0 23 6.892858102933807E-5 0.0 0.0 7.533893906506651 0.0 24 6.892858102933807E-5 0.0 0.0 7.782484833988959 0.0 25 6.892858102933807E-5 0.0 0.0 8.002918436120781 0.0 26 6.892858102933807E-5 0.0 0.0 8.222455966699224 0.0 27 6.892858102933807E-5 0.0 0.0 8.451815820074346 0.0 28 6.892858102933807E-5 0.0 0.0 8.688068531552403 0.0 29 6.892858102933807E-5 0.0 0.0 8.948101603485581 0.0 30 6.892858102933807E-5 0.0 0.0 9.249836466941508 0.0 31 6.892858102933807E-5 0.0 0.0 9.516314361200928 0.0 32 6.892858102933807E-5 0.0 0.0 9.765422253040956 0.0 33 6.892858102933807E-5 0.0 0.0 10.008567822621947 0.0 34 6.892858102933807E-5 0.0 0.0 10.277906252994086 0.0 35 6.892858102933807E-5 0.0 0.0 10.559996470856651 0.0 36 6.892858102933807E-5 0.0 0.0 10.82106347150527 0.0 37 6.892858102933807E-5 0.0 0.0 11.099879581768942 0.0 38 6.892858102933807E-5 0.0 0.0 11.411609089474123 0.0 39 6.892858102933807E-5 0.0 0.0 11.881977726418326 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAACG 20 7.035067E-4 45.0 22 CGCGTAG 20 7.035067E-4 45.0 14 CGGTCTA 710 0.0 43.732395 31 ACGGTCT 745 0.0 41.979866 30 CGACGGT 740 0.0 41.959457 28 CTATCGG 70 0.0 41.785713 2 CGTTTTT 7790 0.0 41.47625 1 CACGACG 785 0.0 40.700638 26 TAGTACG 135 0.0 40.000004 1 TCACGAC 795 0.0 39.622643 25 GGGCGAT 2600 0.0 39.375 7 TATAGCG 115 0.0 39.130432 1 CTAACCT 830 0.0 39.036144 15 AACCCGC 110 0.0 38.863636 21 TAGGGCG 610 0.0 38.360657 5 AGGGCGA 1460 0.0 38.219177 6 TAGGGAC 2975 0.0 38.117645 5 TTAGGGA 3685 0.0 37.91723 4 GTAGGGA 4230 0.0 37.87234 4 TAGGGAT 4950 0.0 37.5 5 >>END_MODULE