##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547539_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3657123 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.356404747666403 31.0 31.0 33.0 30.0 34.0 2 31.760742802470684 31.0 31.0 34.0 30.0 34.0 3 31.77125789862687 31.0 31.0 34.0 30.0 34.0 4 35.594755494961476 37.0 35.0 37.0 33.0 37.0 5 35.52259275939037 37.0 35.0 37.0 33.0 37.0 6 35.57588328311626 37.0 35.0 37.0 33.0 37.0 7 35.989632560895544 37.0 35.0 37.0 35.0 37.0 8 35.95646441205286 37.0 35.0 37.0 35.0 37.0 9 37.6145437274054 39.0 37.0 39.0 35.0 39.0 10 37.12456540291371 39.0 37.0 39.0 33.0 39.0 11 36.85743246809035 39.0 37.0 39.0 32.0 39.0 12 36.62672160602747 39.0 35.0 39.0 32.0 39.0 13 36.55000693167826 39.0 35.0 39.0 32.0 39.0 14 37.62483186920429 40.0 36.0 41.0 32.0 41.0 15 37.80202525318399 40.0 36.0 41.0 33.0 41.0 16 37.8557940216941 40.0 36.0 41.0 33.0 41.0 17 37.774804402258276 40.0 36.0 41.0 33.0 41.0 18 37.64122699728721 39.0 36.0 41.0 33.0 41.0 19 37.568411836298644 39.0 36.0 41.0 33.0 41.0 20 37.390415088581925 39.0 35.0 41.0 32.0 41.0 21 37.264871320981 39.0 35.0 41.0 32.0 41.0 22 37.22502196398644 39.0 35.0 41.0 32.0 41.0 23 37.1378020372845 39.0 35.0 41.0 32.0 41.0 24 37.06242803427722 39.0 35.0 41.0 32.0 41.0 25 36.96999882147798 39.0 35.0 41.0 31.0 41.0 26 36.96013286947144 39.0 35.0 41.0 32.0 41.0 27 36.91418801063021 39.0 35.0 41.0 31.0 41.0 28 36.83601344554175 39.0 35.0 41.0 31.0 41.0 29 36.777551370298454 39.0 35.0 41.0 31.0 41.0 30 36.65290803727411 38.0 35.0 41.0 31.0 41.0 31 36.46969626124142 38.0 35.0 41.0 30.0 41.0 32 36.24703052098603 38.0 35.0 41.0 30.0 41.0 33 36.02921804926988 38.0 35.0 41.0 29.0 41.0 34 35.83092201164686 38.0 35.0 41.0 28.0 41.0 35 35.65279866168024 38.0 35.0 41.0 27.0 41.0 36 35.56343798116716 38.0 35.0 41.0 26.0 41.0 37 35.50293468390316 38.0 35.0 41.0 26.0 41.0 38 35.346895633534885 38.0 35.0 41.0 25.0 41.0 39 35.28478971038163 38.0 35.0 41.0 25.0 41.0 40 35.193169330099096 38.0 34.0 40.0 24.0 41.0 41 35.10510830508025 38.0 34.0 40.0 24.0 41.0 42 35.07577185673 38.0 34.0 40.0 24.0 41.0 43 35.04827510586874 38.0 34.0 40.0 24.0 41.0 44 34.93825009440481 38.0 34.0 40.0 24.0 41.0 45 34.86169674905657 38.0 34.0 40.0 23.0 41.0 46 34.83531398861892 38.0 34.0 40.0 23.0 41.0 47 34.775169443302836 38.0 34.0 40.0 23.0 41.0 48 34.67673633071679 38.0 34.0 40.0 23.0 41.0 49 34.59663347390831 38.0 34.0 40.0 23.0 41.0 50 34.50954042289526 37.0 34.0 40.0 23.0 41.0 51 34.114316362889625 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 6.0 11 6.0 12 8.0 13 9.0 14 47.0 15 92.0 16 257.0 17 674.0 18 1420.0 19 2862.0 20 5313.0 21 8348.0 22 12888.0 23 18957.0 24 29341.0 25 45316.0 26 61908.0 27 69489.0 28 71834.0 29 76267.0 30 86151.0 31 103012.0 32 124774.0 33 157894.0 34 237240.0 35 318839.0 36 289446.0 37 357066.0 38 526053.0 39 1051273.0 40 328.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.615896703501633 23.75766415294208 29.390589269215173 16.235849874341117 2 34.0503723828813 23.984263039553223 29.327944397823096 12.637420179742382 3 27.079373595036316 24.379628467513946 35.34759427014077 13.193403667308976 4 24.88693981580603 26.222552536515725 34.901943412895875 13.98856423478237 5 22.6867403694106 30.42090736352045 33.00102293524172 13.891329331827231 6 21.17341965255202 39.64843402860664 28.87337942967737 10.304766889163968 7 85.28884590428049 2.7051318755207303 10.154375447585439 1.8516467726133357 8 85.89142339483796 2.1855157729176735 9.936089106108819 1.9869717261355442 9 80.69611002965993 5.504818951946653 11.346760828115434 2.4523101902779865 10 35.33952782009246 40.11631547530668 16.146572045840404 8.39758465876045 11 24.184119593461855 24.080240123178793 34.78567715660644 16.949963126752916 12 24.944772161067593 22.696420109468562 34.54387506244663 17.814932667017217 13 22.24431609218503 25.32233671112511 35.13507749124107 17.298269705448792 14 16.61262145134304 30.240875136001716 34.89092382181294 18.25557959084231 15 15.347118486307407 30.725764487549366 37.76536911665262 16.161747909490604 16 20.82773808810915 28.76646478666427 35.65359983790537 14.75219728732121 17 20.37377468572974 28.01497242504559 31.962255576309573 19.6489973129151 18 19.758536970181208 29.280119919401127 34.04941534643489 16.91192776398278 19 21.153376574974374 30.227039123376493 31.23818914485512 17.381395156794017 20 22.165538320696353 30.434223842074772 31.203735832784407 16.196502004444476 21 22.28596084955305 28.084261863765587 33.83159385123224 15.798183435449124 22 20.73386648466568 24.51366825780812 34.44303076489361 20.309434492632597 23 17.12272187727894 29.118490135551905 34.62834036481682 19.130447622352325 24 17.624865228760424 29.57239885013438 35.153015088636614 17.64972083246858 25 18.688296784111444 30.719803517683165 32.1911513503921 18.400748347813295 26 18.23187243086984 32.39248447481805 30.03615136816563 19.33949172614648 27 16.953435801858454 31.40001033599362 33.65826087883836 17.98829298330956 28 15.89610193586598 30.07727659146274 35.16439015039964 18.862231322271633 29 17.161030679033765 29.145095748762074 34.089501501590185 19.604372070613977 30 18.74768773158573 28.69230813401682 33.57546355427476 18.98454058012268 31 20.313426701809046 29.391163491083017 31.1884779374388 19.106931869669136 32 20.102386493426664 30.157612965164148 30.600720839851437 19.139279701557754 33 19.80906849455159 29.80873216460043 31.311443448853097 19.07075589199488 34 17.485848848944922 29.457609164362257 31.970021243474722 21.0865207432181 35 17.782858274113288 29.85086911214088 30.943339887665793 21.422932726080035 36 20.46395486287992 29.871021565312404 30.352000739379015 19.31302283242866 37 18.81063338586096 31.458143464138338 29.97758073764541 19.753642412355283 38 18.388498281299263 31.466045850795833 29.697360466136907 20.448095401768 39 18.76887925289907 29.12590033203696 30.415137800943526 21.690082614120442 40 20.121663941847185 28.844367553401952 30.81632747927811 20.217641025472755 41 18.384205289239656 28.817351781714752 30.089499314078306 22.708943614967282 42 19.230745041935972 30.098495456674552 29.47964834652813 21.191111154861346 43 19.02894707123605 29.80282588253116 30.389297816890494 20.7789292293423 44 19.597454064301363 30.242789208894532 30.18353498091259 19.97622174589151 45 18.845715607596464 30.820210312860684 29.06352889962957 21.27054517991328 46 19.98087020863121 30.44948173742037 29.27249097172832 20.297157082220092 47 18.994985949337774 29.88324428792797 30.081542239623882 21.04022752311038 48 18.25276316930002 30.318805246637865 30.71086206288386 20.71756952117826 49 19.268753060807633 28.810105648620514 30.87046839824638 21.05067289232547 50 18.115469455088057 29.657629781661704 31.44786215831406 20.779038604936176 51 17.32807455477981 29.901756107191364 30.55204870057693 22.2181206374519 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2986.0 1 4140.5 2 5295.0 3 45918.0 4 86541.0 5 56917.5 6 27294.0 7 26771.5 8 26249.0 9 29298.5 10 32348.0 11 35101.0 12 37854.0 13 40382.5 14 42911.0 15 40850.0 16 38789.0 17 36921.0 18 35053.0 19 32974.5 20 30896.0 21 30170.0 22 29444.0 23 31329.0 24 33214.0 25 38323.5 26 48503.0 27 53573.0 28 62731.0 29 71889.0 30 84428.0 31 96967.0 32 107892.0 33 118817.0 34 131893.5 35 144970.0 36 151553.5 37 158137.0 38 177191.0 39 196245.0 40 208154.0 41 220063.0 42 233421.5 43 246780.0 44 252780.0 45 258780.0 46 265466.0 47 272152.0 48 287329.0 49 302506.0 50 294978.0 51 287450.0 52 259480.0 53 231510.0 54 199622.5 55 167735.0 56 142929.0 57 118123.0 58 105946.0 59 93769.0 60 76601.0 61 59433.0 62 49396.5 63 39360.0 64 31105.5 65 22851.0 66 17256.5 67 11662.0 68 8714.5 69 5767.0 70 4289.5 71 2812.0 72 2160.5 73 1509.0 74 1294.0 75 758.5 76 438.0 77 325.5 78 213.0 79 171.0 80 129.0 81 81.5 82 34.0 83 39.0 84 44.0 85 26.5 86 9.0 87 7.5 88 6.0 89 4.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3657123.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.654252698425694 #Duplication Level Percentage of deduplicated Percentage of total 1 74.87540565001196 15.464955491924778 2 9.122211842387129 3.768249371224704 3 3.7834618186920834 2.3443372943433465 4 2.1147834351664794 1.7471708588949284 5 1.4518279996178 1.4993211189377964 6 1.0172721704363552 1.2606597882761068 7 0.731093447072075 1.0570132161392825 8 0.5935531357232241 0.9807517164136347 9 0.47469751712302943 0.8824070226576877 >10 3.8628267951630804 17.653858523276927 >50 1.0451535298498866 15.468391383368244 >100 0.9181794260568245 33.74349300248367 >500 0.00577364797319107 0.8363057178700318 >1k 0.0036253138436316014 1.4950670264747783 >5k 0.0 0.0 >10k+ 1.342708830974667E-4 1.798018467714075 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 64834 1.772814313327717 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 4623 0.12641084262137203 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.7343898468823716E-5 0.0 0.0 0.10068023416220893 0.0 2 2.7343898468823716E-5 0.0 0.0 0.287110933922649 0.0 3 2.7343898468823716E-5 0.0 0.0 0.4479204008178013 0.0 4 2.7343898468823716E-5 0.0 0.0 0.6292651354630402 0.0 5 2.7343898468823716E-5 0.0 0.0 1.090912173312191 0.0 6 2.7343898468823716E-5 0.0 0.0 1.7134780536503695 0.0 7 2.7343898468823716E-5 0.0 0.0 2.2012658584357156 0.0 8 2.7343898468823716E-5 0.0 0.0 3.056227531860427 0.0 9 2.7343898468823716E-5 0.0 0.0 3.4702961863738246 0.0 10 2.7343898468823716E-5 0.0 0.0 3.9980881146190597 0.0 11 2.7343898468823716E-5 0.0 0.0 4.619614926815423 0.0 12 2.7343898468823716E-5 0.0 0.0 5.08902763182972 0.0 13 2.7343898468823716E-5 0.0 0.0 5.29613031883259 0.0 14 2.7343898468823716E-5 0.0 0.0 5.405970758981855 0.0 15 2.7343898468823716E-5 0.0 0.0 5.529428460568594 0.0 16 2.7343898468823716E-5 0.0 0.0 5.753648428012949 0.0 17 2.7343898468823716E-5 0.0 0.0 6.060064154254587 0.0 18 2.7343898468823716E-5 0.0 0.0 6.412034815345287 0.0 19 2.7343898468823716E-5 0.0 0.0 6.6435556036808165 0.0 20 2.7343898468823716E-5 0.0 0.0 6.883060810369244 0.0 21 2.7343898468823716E-5 0.0 0.0 7.142773158026132 0.0 22 2.7343898468823716E-5 0.0 0.0 7.452798278865655 0.0 23 2.7343898468823716E-5 0.0 0.0 7.76230386563427 0.0 24 2.7343898468823716E-5 0.0 0.0 8.001371569947196 0.0 25 2.7343898468823716E-5 0.0 0.0 8.212903968502017 0.0 26 2.7343898468823716E-5 0.0 0.0 8.410955825111706 0.0 27 2.7343898468823716E-5 0.0 0.0 8.633097656272431 0.0 28 2.7343898468823716E-5 0.0 0.0 8.865903607835996 0.0 29 2.7343898468823716E-5 0.0 0.0 9.125780018883697 0.0 30 2.7343898468823716E-5 0.0 0.0 9.413137047892565 0.0 31 2.7343898468823716E-5 0.0 0.0 9.673204866229547 0.0 32 2.7343898468823716E-5 0.0 0.0 9.911807724268503 0.0 33 2.7343898468823716E-5 0.0 0.0 10.153773881819124 0.0 34 2.7343898468823716E-5 0.0 0.0 10.41490811219639 0.0 35 2.7343898468823716E-5 0.0 0.0 10.697534646770153 0.0 36 2.7343898468823716E-5 0.0 0.0 10.965012661592185 0.0 37 5.468779693764743E-5 0.0 0.0 11.232408644718813 0.0 38 5.468779693764743E-5 0.0 0.0 11.546726757617941 0.0 39 5.468779693764743E-5 0.0 0.0 12.01633086992152 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCGTAG 45 3.8562575E-10 45.000004 19 GTACGAT 45 3.8562575E-10 45.000004 31 CGTTAGT 20 7.035309E-4 45.0 22 CGTCGAG 20 7.035309E-4 45.0 21 AATCGCG 20 7.035309E-4 45.0 1 CGGACCG 25 3.8924816E-5 45.0 6 GCTAGCG 115 0.0 44.999996 1 CGTTTTT 26000 0.0 44.091347 1 CCAGTCG 185 0.0 43.783783 28 CGACGGT 905 0.0 42.762432 28 CGGTCTA 920 0.0 42.065216 31 TACGGGA 1980 0.0 41.81818 4 TAGTACG 70 0.0 41.785713 1 TCACGAC 935 0.0 41.63102 25 CTACGGG 830 0.0 41.20482 3 TATAGCG 340 0.0 41.02941 1 GACGGTC 940 0.0 40.93085 29 ACGGGAT 2465 0.0 40.52738 5 CGTAAGG 415 0.0 40.120483 2 TCGCGAG 90 0.0 40.000004 1 >>END_MODULE