SRR1547537_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547537_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2980954
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47402	1.5901620756308215	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	3463	0.11617086342157579	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	40	6.8212103E-9	45.0	39
CGTTAGT	25	3.8923077E-5	45.0	39
CGTTACG	20	7.035098E-4	45.0	18
CGTACCG	20	7.035098E-4	45.0	12
TCCGTAC	20	7.035098E-4	45.0	11
CGTAACG	25	3.8923077E-5	45.0	37
CCCGGTA	25	3.8923077E-5	45.0	28
CGGTCTA	700	0.0	44.035713	31
CGTTTTT	19440	0.0	43.506943	1
TCGTTAG	130	0.0	43.26923	1
CGACGGT	710	0.0	43.09859	28
ACGATAT	190	0.0	42.63158	18
CACGACG	735	0.0	41.938774	26
ATATACG	60	3.6379788E-12	41.249996	1
ACGGTCT	760	0.0	40.55921	30
CACGATA	50	1.0822987E-9	40.5	22
GTCGGTT	50	1.0822987E-9	40.5	8
TATAGCG	90	0.0	40.0	1
ACGACGG	775	0.0	39.774193	27
AGGGATC	2690	0.0	39.646843	6