SRR1547536_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547536_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1846298
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7700	0.41705076861915036	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4126	0.223474217054885	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2374	0.12858162658465752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCG	20	7.034398E-4	45.000004	40
AATCCCG	65	0.0	45.000004	32
GGTACGA	20	7.034398E-4	45.000004	8
ACACGAT	20	7.034398E-4	45.000004	15
CACGGTA	20	7.034398E-4	45.000004	11
CAAGTCG	80	0.0	45.000004	26
CGCATTA	40	6.8193913E-9	45.000004	31
CGTGACG	30	2.16622E-6	45.000004	2
TAGCGGA	60	0.0	45.000004	3
CACGCTA	30	2.16622E-6	45.000004	32
ACCGACA	65	0.0	45.000004	27
TCCTCGA	20	7.034398E-4	45.000004	43
CCGTCTG	30	2.16622E-6	45.000004	37
ATATCGT	30	2.16622E-6	45.000004	23
CGGATAT	20	7.034398E-4	45.000004	6
CCGAGTC	20	7.034398E-4	45.000004	25
TCTCGAG	40	6.8193913E-9	45.000004	1
AACGCGC	20	7.034398E-4	45.000004	29
TTGCGCA	65	0.0	45.000004	12
GCGATAC	80	0.0	45.000004	9