SRR1547532_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547532_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3027013
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10479	0.346182854186619	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6825	0.22546979481092416	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4960	0.16385790216295734	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	4559	0.15061051934696018	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3832	0.12659344376783319	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3334	0.1101415818167943	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGA	30	2.166682E-6	45.000004	31
GTCGATA	50	2.1827873E-11	45.0	32
ACGCATC	35	1.2128112E-7	45.0	32
TCGAACG	35	1.2128112E-7	45.0	1
TACGTCG	65	0.0	44.999996	1
ATCGGTA	95	0.0	42.63158	27
CGACGTG	55	6.184564E-11	40.909092	14
CGTTTTT	6250	0.0	40.5	1
CGGTCTA	575	0.0	40.304348	31
CGCATCG	180	0.0	40.0	21
CCAGTCG	180	0.0	40.0	28
CGAACTA	40	3.4607183E-7	39.375	32
CGAATTA	40	3.4607183E-7	39.375	33
TCGAATC	80	0.0	39.375	17
GCGAGAC	690	0.0	39.130436	21
ATGGGAC	1885	0.0	38.793102	5
ACGGTCT	605	0.0	38.67769	30
TGTGCGA	35	6.251672E-6	38.571426	21
AACGGGA	1190	0.0	38.571426	4
CCGTTTA	35	6.251672E-6	38.571426	29