##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547532_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3027013 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.364664439828967 31.0 31.0 33.0 30.0 34.0 2 31.772313498488444 31.0 31.0 34.0 30.0 34.0 3 31.935974176523192 31.0 31.0 34.0 30.0 34.0 4 35.66960762969964 37.0 35.0 37.0 33.0 37.0 5 35.57036920555016 37.0 35.0 37.0 33.0 37.0 6 35.621506746089295 37.0 35.0 37.0 33.0 37.0 7 35.92267657918879 37.0 35.0 37.0 35.0 37.0 8 35.84728443518412 37.0 35.0 37.0 35.0 37.0 9 37.45024847927643 39.0 37.0 39.0 35.0 39.0 10 37.07849454230953 39.0 37.0 39.0 33.0 39.0 11 36.87018952346752 39.0 37.0 39.0 32.0 39.0 12 36.39047272013698 38.0 35.0 39.0 32.0 39.0 13 36.19426576628511 39.0 35.0 39.0 32.0 39.0 14 37.31552656034183 39.0 35.0 41.0 32.0 41.0 15 37.47507889791025 39.0 35.0 41.0 32.0 41.0 16 37.56115979680299 39.0 35.0 41.0 33.0 41.0 17 37.45530957415776 39.0 35.0 41.0 32.0 41.0 18 37.384711925584725 39.0 35.0 41.0 32.0 41.0 19 37.36824057247194 39.0 35.0 41.0 32.0 41.0 20 37.26137086295962 39.0 35.0 41.0 32.0 41.0 21 37.14659633110264 39.0 35.0 41.0 32.0 41.0 22 37.04696312833807 39.0 35.0 41.0 31.0 41.0 23 36.96631629926928 39.0 35.0 41.0 31.0 41.0 24 36.89106059339686 39.0 35.0 41.0 31.0 41.0 25 36.80355122359897 38.0 35.0 41.0 31.0 41.0 26 36.78723249619344 39.0 35.0 41.0 31.0 41.0 27 36.762486979738775 39.0 35.0 41.0 31.0 41.0 28 36.68684112027269 38.0 35.0 41.0 31.0 41.0 29 36.65362322527191 38.0 35.0 41.0 31.0 41.0 30 36.5569391343876 38.0 35.0 41.0 31.0 41.0 31 36.46409215949849 38.0 35.0 41.0 30.0 41.0 32 36.32607854673898 38.0 35.0 41.0 30.0 41.0 33 36.22230000333662 38.0 35.0 41.0 30.0 41.0 34 36.139373699419195 38.0 35.0 41.0 30.0 41.0 35 36.06161585695205 38.0 35.0 41.0 30.0 41.0 36 36.001797811902364 38.0 35.0 41.0 29.0 41.0 37 35.95794666227069 38.0 35.0 41.0 29.0 41.0 38 35.83158909459589 38.0 35.0 41.0 29.0 41.0 39 35.791617016511 38.0 35.0 40.0 29.0 41.0 40 35.68232974222443 38.0 35.0 40.0 28.0 41.0 41 35.64740488395656 38.0 35.0 40.0 28.0 41.0 42 35.631564185551895 38.0 35.0 40.0 28.0 41.0 43 35.579105540676565 38.0 34.0 40.0 28.0 41.0 44 35.46991770435079 38.0 34.0 40.0 28.0 41.0 45 35.395362689225315 38.0 34.0 40.0 27.0 41.0 46 35.323365641310424 38.0 34.0 40.0 27.0 41.0 47 35.251383789894525 37.0 34.0 40.0 27.0 41.0 48 35.15184506971064 37.0 34.0 40.0 27.0 41.0 49 35.08856982114051 37.0 34.0 40.0 27.0 41.0 50 35.000030392997985 37.0 34.0 40.0 27.0 41.0 51 34.57518154035017 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 5.0 11 5.0 12 8.0 13 12.0 14 26.0 15 76.0 16 202.0 17 526.0 18 1118.0 19 2207.0 20 3994.0 21 6496.0 22 9959.0 23 14545.0 24 20276.0 25 28340.0 26 37197.0 27 44228.0 28 50432.0 29 58641.0 30 70184.0 31 85861.0 32 107043.0 33 137393.0 34 227614.0 35 331918.0 36 218147.0 37 288061.0 38 440931.0 39 841202.0 40 362.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.2435840216081 23.803333517232993 27.543687456908838 12.409395004250065 2 31.410998234893604 26.04177781859543 28.615866532452948 13.931357414058018 3 30.856953703205107 25.727177253616023 29.407009484267167 14.008859558911707 4 28.080487265829383 26.975536609852686 29.530101126093612 15.413874998224323 5 24.59051216496262 32.144757885083415 27.665292484703567 15.599437465250396 6 22.58890199678693 41.86975741432231 24.889916230951105 10.651424357939659 7 86.40977095242076 4.820758946195474 6.6492281334767975 2.1202419679069764 8 86.1619028395319 5.009591964091334 6.192639410534411 2.6358657858423467 9 79.81967702153906 8.04340780829154 8.085726754394514 4.051188415774891 10 41.308676242883664 33.88614452597329 13.733902034778179 11.071277196364864 11 35.690299314869144 24.97006124519452 23.255962230753553 16.08367720918278 12 34.85564812572658 22.239514663465272 26.104281679662428 16.80055553114572 13 25.16193356288856 29.816588167939813 25.516903957796018 19.504574311375602 14 17.930349159385838 34.98362907592402 26.9767919728128 20.10922979187734 15 18.478017768671627 28.55290016924275 35.65138306310545 17.317698998980184 16 21.22940998271233 25.468010874086104 34.94071548420836 18.361863658993204 17 20.17639171024373 25.6242705267536 28.073087231538153 26.126250531464517 18 21.962938381830536 28.330205387291034 29.35771997014879 20.349136260729637 19 26.48336825775112 28.765485975778766 24.594476469047212 20.156669297422905 20 29.44685074031727 26.516073766448972 25.92730853815296 18.1097669550808 21 24.85536071368045 28.67321679820998 26.766518676992796 19.70490381111677 22 23.483645428678372 25.544455871183903 27.304078310862888 23.66782038927484 23 22.99425208943602 29.103475934857233 26.7004139063823 21.201858069324448 24 22.070172807318635 26.403784853253025 31.47948158795486 20.046560751473482 25 21.498057656177888 28.21880844251412 28.41920401399003 21.86392988731796 26 20.057594731175584 32.88720596839194 25.729820123005748 21.325379177426722 27 21.06165384819953 31.597518742073454 27.225023480242733 20.11580392948428 28 18.470155232237193 31.049222451307607 31.458173453500198 19.022448862955 29 20.566578339769272 27.67933272833648 30.54780405634201 21.206284875552235 30 20.765189974407114 29.3663092956654 28.60826828295749 21.26023244697 31 25.744223761179754 28.66618015845984 24.575315665971704 21.014280414388704 32 26.548250701268877 29.433504249899155 25.11201636729013 18.906228681541837 33 24.97303447325796 30.0885724640099 24.38773801103596 20.550655051696175 34 21.164593610929323 29.856825854398377 27.463707622002282 21.514872912670015 35 22.406874367569614 27.497437242588653 27.450658454390513 22.64502993545122 36 23.334257236424158 30.687281488384755 25.758297040680038 20.220164234511053 37 21.961583911268303 30.945952329904102 26.748084662999467 20.34437909582813 38 21.467400371257078 31.38595704742596 25.090278766559642 22.056363814757322 39 22.58923235546065 28.98527360140178 25.72377455927675 22.70171948386082 40 22.95256082481311 28.383690456565596 27.60444041700515 21.05930830161615 41 19.181219241542735 27.185909013274802 28.57087168109288 25.062000064089585 42 21.96703482938461 28.537042952904397 25.281688582110483 24.214233635600507 43 22.84298085274163 27.78210731172942 25.4639474623994 23.910964373129552 44 21.58768396435694 30.01163192890153 26.395492850542762 22.005191256198767 45 20.994789252639485 31.40049282906945 24.769500494381756 22.835217423909313 46 21.383324088796446 32.46272810853472 24.45447046312652 21.699477339542312 47 22.41225921395118 28.737702811319277 26.71759255741551 22.13244541731403 48 22.01939667916854 26.86308251731988 28.936512661161352 22.18100814235023 49 20.413655309706304 27.970808186155793 28.76290917812378 22.852627326014126 50 19.505102885253546 29.210247858202127 28.54553317081889 22.739116085725435 51 19.8072158923665 29.17648520174839 26.49341116143208 24.52288774445303 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2363.0 1 4319.5 2 6276.0 3 13097.5 4 19919.0 5 14928.5 6 9938.0 7 9871.5 8 9805.0 9 9934.5 10 10064.0 11 10195.0 12 10326.0 13 10393.0 14 10460.0 15 10344.0 16 10228.0 17 9625.5 18 9023.0 19 10466.5 20 11910.0 21 11479.5 22 11049.0 23 13047.5 24 15046.0 25 18899.0 26 26973.5 27 31195.0 28 41907.5 29 52620.0 30 60406.0 31 68192.0 32 76654.5 33 85117.0 34 88209.5 35 91302.0 36 94622.0 37 97942.0 38 113032.0 39 128122.0 40 154712.5 41 181303.0 42 203064.5 43 224826.0 44 225792.5 45 226759.0 46 228045.0 47 229331.0 48 232954.5 49 236578.0 50 233015.5 51 229453.0 52 216298.5 53 203144.0 54 185582.5 55 168021.0 56 156543.5 57 145066.0 58 141149.5 59 137233.0 60 127371.5 61 117510.0 62 100014.0 63 82518.0 64 65771.5 65 49025.0 66 38409.0 67 27793.0 68 23531.5 69 19270.0 70 17047.0 71 14824.0 72 12139.0 73 9454.0 74 7368.0 75 4338.0 76 3394.0 77 2280.5 78 1167.0 79 988.5 80 810.0 81 583.0 82 356.0 83 249.5 84 143.0 85 93.5 86 44.0 87 39.5 88 35.0 89 24.5 90 14.0 91 10.0 92 6.0 93 4.5 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3027013.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.92753167299491 #Duplication Level Percentage of deduplicated Percentage of total 1 77.2662666202534 12.306609088481554 2 9.56261698189311 3.0461776971164296 3 3.4745329223645585 1.6602219950947523 4 1.6786893104859129 1.0694950864752943 5 0.9851648675517373 0.7845622315526065 6 0.670383133628041 0.6406529156341322 7 0.47346613546455596 0.527880280809155 8 0.3539608956493514 0.45101787011653527 9 0.26138295941479 0.3746866828374189 >10 2.3817300922532594 8.766773906696336 >50 1.044974644717943 12.265291066082744 >100 1.8249280880258598 54.07541429622127 >500 0.015795683868377812 1.6498691161786923 >1k 0.005686446192616013 1.8008879589128433 >5k 2.1060911824503752E-4 0.22894349215028414 >10k+ 2.1060911824503752E-4 0.3515163156399747 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10479 0.346182854186619 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 6825 0.22546979481092416 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 4960 0.16385790216295734 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 4559 0.15061051934696018 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3832 0.12659344376783319 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3334 0.1101415818167943 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.607173474312796E-5 0.0 0.0 0.06356100882288909 0.0 2 6.607173474312796E-5 0.0 0.0 0.1910464210097545 0.0 3 6.607173474312796E-5 0.0 0.0 0.26950660601721893 0.0 4 6.607173474312796E-5 0.0 0.0 0.42679037057323505 0.0 5 6.607173474312796E-5 0.0 0.0 0.7659035491423394 0.0 6 6.607173474312796E-5 0.0 0.0 1.0559254287972994 0.0 7 6.607173474312796E-5 0.0 0.0 1.249251324655692 0.0 8 6.607173474312796E-5 0.0 0.0 1.6929890951905393 0.0 9 6.607173474312796E-5 0.0 0.0 1.8228861256955289 0.0 10 6.607173474312796E-5 0.0 0.0 2.1650055681954457 0.0 11 6.607173474312796E-5 0.0 0.0 2.5649708144629706 0.0 12 6.607173474312796E-5 0.0 0.0 2.9523163593945583 0.0 13 6.607173474312796E-5 0.0 0.0 3.097277745420981 0.0 14 6.607173474312796E-5 0.0 0.0 3.1562798045465943 0.0 15 6.607173474312796E-5 0.0 0.0 3.2652651310053837 0.0 16 6.607173474312796E-5 0.0 0.0 3.4786437983583154 0.0 17 6.607173474312796E-5 0.0 0.0 3.7090359374076027 0.0 18 6.607173474312796E-5 0.0 0.0 3.9959854813970077 0.0 19 6.607173474312796E-5 0.0 0.0 4.177980074746953 0.0 20 6.607173474312796E-5 0.0 0.0 4.357496978044032 0.0 21 6.607173474312796E-5 0.0 0.0 4.581546230557979 0.0 22 6.607173474312796E-5 0.0 0.0 4.831958105234434 0.0 23 6.607173474312796E-5 0.0 0.0 5.096344151809061 0.0 24 6.607173474312796E-5 0.0 0.0 5.293733459354155 0.0 25 6.607173474312796E-5 0.0 0.0 5.4693190944340175 0.0 26 6.607173474312796E-5 0.0 0.0 5.635621650782471 0.0 27 6.607173474312796E-5 0.0 0.0 5.807639412186204 0.0 28 6.607173474312796E-5 0.0 0.0 5.996769752888408 0.0 29 6.607173474312796E-5 0.0 0.0 6.208992164883336 0.0 30 6.607173474312796E-5 0.0 0.0 6.4387235865851915 0.0 31 9.910760211469194E-5 0.0 0.0 6.669313940838708 0.0 32 9.910760211469194E-5 0.0 0.0 6.879587236658713 0.0 33 9.910760211469194E-5 0.0 0.0 7.08926588686603 0.0 34 9.910760211469194E-5 0.0 0.0 7.298118640389057 0.0 35 9.910760211469194E-5 0.0 0.0 7.53729832015918 0.0 36 9.910760211469194E-5 0.0 0.0 7.785199468915396 0.0 37 9.910760211469194E-5 0.0 0.0 8.032935438334754 0.0 38 9.910760211469194E-5 0.0 0.0 8.269868679123611 0.0 39 9.910760211469194E-5 0.0 0.0 8.509775147975908 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGA 30 2.166682E-6 45.000004 31 GTCGATA 50 2.1827873E-11 45.0 32 ACGCATC 35 1.2128112E-7 45.0 32 TCGAACG 35 1.2128112E-7 45.0 1 TACGTCG 65 0.0 44.999996 1 ATCGGTA 95 0.0 42.63158 27 CGACGTG 55 6.184564E-11 40.909092 14 CGTTTTT 6250 0.0 40.5 1 CGGTCTA 575 0.0 40.304348 31 CGCATCG 180 0.0 40.0 21 CCAGTCG 180 0.0 40.0 28 CGAACTA 40 3.4607183E-7 39.375 32 CGAATTA 40 3.4607183E-7 39.375 33 TCGAATC 80 0.0 39.375 17 GCGAGAC 690 0.0 39.130436 21 ATGGGAC 1885 0.0 38.793102 5 ACGGTCT 605 0.0 38.67769 30 TGTGCGA 35 6.251672E-6 38.571426 21 AACGGGA 1190 0.0 38.571426 4 CCGTTTA 35 6.251672E-6 38.571426 29 >>END_MODULE