SRR1547529_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547529_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	798888
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3116	0.39004215860045466	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2013	0.251975245591372	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1153	0.1443256126015161	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	799	0.10001401948708706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGTA	25	3.8897328E-5	45.000004	32
ACGCACT	25	3.8897328E-5	45.000004	24
CGACCCA	25	3.8897328E-5	45.000004	20
CGACAGG	60	0.0	45.000004	2
TTATCCG	25	3.8897328E-5	45.000004	1
CCCGTTG	30	2.1646665E-6	45.000004	20
TACGCCC	30	2.1646665E-6	45.000004	34
AGGTTCG	30	2.1646665E-6	45.000004	43
TATTACG	30	2.1646665E-6	45.000004	30
TTGAACG	25	3.8897328E-5	45.000004	34
TAAGGTC	25	3.8897328E-5	45.000004	43
CGCACTC	25	3.8897328E-5	45.000004	25
ACGTACG	25	3.8897328E-5	45.000004	38
TATACGA	25	3.8897328E-5	45.000004	31
TGTACGT	25	3.8897328E-5	45.000004	19
TAATGCG	50	2.1827873E-11	45.000004	1
ATCGCGC	25	3.8897328E-5	45.000004	10
TGCGTAG	60	0.0	45.000004	1
CTTACCG	25	3.8897328E-5	45.000004	22
AAGTACG	20	7.031994E-4	45.0	1