SRR1547522_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547522_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2612537
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12345	0.4725291928879859	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4644	0.17775824801715726	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	4342	0.16619860312026202	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3669	0.14043820240632	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3244	0.12417049021698066	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2660	0.10181673982033557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	35	1.2127202E-7	45.000004	23
ACTATCG	75	0.0	45.000004	24
ACGCCTA	35	1.2127202E-7	45.000004	28
TCCGCGA	30	2.1665674E-6	45.000004	32
ATAGCGC	60	0.0	45.000004	12
TAACGCG	30	2.1665674E-6	45.000004	34
TTATCCG	35	1.2127202E-7	45.000004	18
ACGATGT	30	2.1665674E-6	45.000004	29
ACCTACG	35	1.2127202E-7	45.000004	29
CGGATAT	35	1.2127202E-7	45.000004	20
AACGCAT	35	1.2127202E-7	45.000004	14
CGTAAGA	70	0.0	45.000004	33
ACGTATC	30	2.1665674E-6	45.000004	32
GCGTGAT	35	1.2127202E-7	45.000004	15
ATCGGCC	30	2.1665674E-6	45.000004	26
TTCGCAC	60	0.0	45.000004	41
CAATCGT	35	1.2127202E-7	45.000004	32
TGTCGTA	35	1.2127202E-7	45.000004	26
GATACGT	45	3.8562575E-10	45.0	11
GGTACGT	20	7.034939E-4	45.0	7