SRR1547517_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547517_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3201459
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13797	0.43095975928475105	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4901	0.1530864521457248	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGTA	25	3.8923718E-5	45.0	36
GTAATCG	20	7.0351776E-4	45.0	1
TACGTCG	20	7.0351776E-4	45.0	34
TTTCGCG	65	0.0	44.999996	1
TACGATA	30	2.166722E-6	44.999996	24
AGCGATC	30	2.166722E-6	44.999996	45
CCCGGTA	60	0.0	44.999996	36
CTAGACG	105	0.0	42.857143	1
ACGGTCT	865	0.0	42.65896	30
CGATACA	90	0.0	42.500004	10
CGTTTTT	7460	0.0	42.406166	1
TCGTCGA	80	0.0	42.1875	32
TTCGTAA	70	0.0	41.785713	28
TCGCATA	65	0.0	41.53846	37
CCGGTTA	65	0.0	41.53846	45
TCACGAC	905	0.0	41.51934	25
CGACGGT	905	0.0	41.51934	28
CTCACGA	915	0.0	41.311478	24
CTACGGG	425	0.0	41.294117	3
CGTTCTA	60	3.6379788E-12	41.249996	21