SRR1547514_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547514_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2401709
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12638	0.5262086289388098	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4402	0.18328615165284387	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3878	0.16146835440929772	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3545	0.14760322753505942	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2610	0.10867261604132723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	30	2.1664928E-6	45.000004	1
ATTACGC	30	2.1664928E-6	45.000004	41
GCGCAAC	60	0.0	45.000004	27
CCGTCGA	30	2.1664928E-6	45.000004	24
ATATCGT	30	2.1664928E-6	45.000004	11
CGAGCAA	30	2.1664928E-6	45.000004	33
CACCGTA	45	3.8562575E-10	45.000004	25
TATCGGT	30	2.1664928E-6	45.000004	28
ATACCCG	30	2.1664928E-6	45.000004	22
ACGACTA	45	3.8562575E-10	45.000004	10
TACGTGC	30	2.1664928E-6	45.000004	1
TACCGTA	30	2.1664928E-6	45.000004	45
CTTCGTA	40	6.8212103E-9	45.0	12
AAACTCG	25	3.89208E-5	45.0	39
GGTACGT	20	7.0348236E-4	45.0	9
CGTATTA	50	2.1827873E-11	45.0	13
CCCTCGA	25	3.89208E-5	45.0	23
CGTATCA	25	3.89208E-5	45.0	11
CACGGTA	20	7.0348236E-4	45.0	18
GATCGAC	80	0.0	45.0	9