##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547507_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3048548 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.574659477233094 31.0 31.0 33.0 30.0 34.0 2 32.00150727493876 31.0 31.0 34.0 30.0 34.0 3 32.05470112328886 33.0 31.0 34.0 30.0 34.0 4 35.79161981376052 37.0 35.0 37.0 35.0 37.0 5 35.73392218196991 37.0 35.0 37.0 33.0 37.0 6 35.78765530344282 37.0 35.0 37.0 35.0 37.0 7 36.10102547179838 37.0 35.0 37.0 35.0 37.0 8 36.10639556930053 37.0 35.0 37.0 35.0 37.0 9 37.956235886723775 39.0 38.0 39.0 35.0 39.0 10 37.446221611075174 39.0 37.0 39.0 35.0 39.0 11 37.11867256149485 39.0 37.0 39.0 33.0 39.0 12 36.53319219510403 39.0 35.0 39.0 33.0 39.0 13 36.24924882271822 39.0 35.0 39.0 32.0 39.0 14 37.293108391273485 39.0 35.0 41.0 32.0 41.0 15 37.47840480123652 40.0 35.0 41.0 33.0 41.0 16 37.59472542338189 40.0 35.0 41.0 33.0 41.0 17 37.519694293808065 39.0 35.0 41.0 33.0 41.0 18 37.41011425767283 39.0 35.0 41.0 32.0 41.0 19 37.37102581294439 39.0 35.0 41.0 32.0 41.0 20 37.23668218443666 39.0 35.0 41.0 32.0 41.0 21 37.10807538539659 39.0 35.0 41.0 32.0 41.0 22 37.05264375040183 39.0 35.0 41.0 32.0 41.0 23 36.988871751404275 39.0 35.0 41.0 32.0 41.0 24 36.86269397759195 38.0 35.0 41.0 32.0 41.0 25 36.770176162553454 38.0 35.0 41.0 31.0 41.0 26 36.72858947931933 38.0 35.0 41.0 31.0 41.0 27 36.688996204094536 38.0 35.0 41.0 31.0 41.0 28 36.69843085954363 38.0 35.0 41.0 31.0 41.0 29 36.65872736791417 38.0 35.0 41.0 31.0 41.0 30 36.611514071617044 38.0 35.0 41.0 31.0 41.0 31 36.534252043923864 38.0 35.0 41.0 31.0 41.0 32 36.40461295016513 38.0 35.0 41.0 31.0 41.0 33 36.27477376114793 38.0 35.0 41.0 30.0 41.0 34 36.141920350278234 38.0 35.0 41.0 30.0 41.0 35 35.967789255737486 38.0 35.0 41.0 30.0 41.0 36 35.84483432768649 38.0 35.0 41.0 29.0 41.0 37 35.798417476123056 38.0 35.0 41.0 29.0 41.0 38 35.65465657749197 38.0 35.0 41.0 29.0 41.0 39 35.595900408981585 38.0 35.0 40.0 28.0 41.0 40 35.425237194887536 38.0 35.0 40.0 27.0 41.0 41 35.367773116906804 38.0 34.0 40.0 27.0 41.0 42 35.33511757072547 38.0 34.0 40.0 27.0 41.0 43 35.23836724893293 38.0 34.0 40.0 27.0 41.0 44 35.11097578256928 38.0 34.0 40.0 26.0 41.0 45 35.011134809096 37.0 34.0 40.0 26.0 41.0 46 34.98458118422278 37.0 34.0 40.0 26.0 41.0 47 34.88664997238029 37.0 34.0 40.0 26.0 41.0 48 34.77436799420577 37.0 34.0 40.0 25.0 41.0 49 34.68423492101814 37.0 34.0 40.0 24.0 41.0 50 34.5565626652426 36.0 34.0 40.0 24.0 41.0 51 34.15872703988915 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 9.0 12 23.0 13 44.0 14 96.0 15 156.0 16 269.0 17 614.0 18 1335.0 19 2614.0 20 4228.0 21 6582.0 22 10127.0 23 14539.0 24 20850.0 25 29944.0 26 40080.0 27 48083.0 28 52483.0 29 58311.0 30 67920.0 31 82207.0 32 103210.0 33 135444.0 34 237248.0 35 374682.0 36 201524.0 37 266900.0 38 429269.0 39 859509.0 40 241.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.890904128785245 24.053254204952655 28.532271756915094 14.523569909347007 2 28.94991320458133 26.844058220503662 30.563140222820834 13.642888352094177 3 28.80686149603024 26.145233730943385 31.979322615225346 13.068582157801027 4 25.965574430843795 27.086501508259015 32.67604774469682 14.271876316200368 5 24.557559861284783 32.09363933256094 29.78417922237078 13.564621583783493 6 22.27270162713528 40.71233255963167 26.640289081884227 10.374676731348826 7 88.00891440777708 3.657511707212745 6.520350015810806 1.8132238691993696 8 89.1198367222691 3.1021325562202073 6.008335771652603 1.7696949498580965 9 84.40729816292871 5.422384689366872 7.1633446480094785 3.0069724996949367 10 44.62002894492723 31.64391703853769 13.50944777644964 10.226606240085443 11 36.27835284207433 21.98718865505808 25.070000537961022 16.664457964906575 12 34.41897585342268 20.989074142837836 27.540553732465423 17.051396271274065 13 24.47204374016745 29.4833474821456 27.593989007225733 18.450619770461216 14 17.579418136109386 33.71532939615843 30.086093445141753 18.619159022590427 15 16.824042134156983 26.87853364946197 39.99937019197336 16.298054024407683 16 22.135357553825624 23.98420493953187 36.856529731531204 17.0239077751113 17 21.602513721286332 24.176329190158725 28.382429930576787 25.83872715797816 18 23.578175577356827 25.860114388882838 31.12744165419078 19.434268379569552 19 26.95050233750625 26.63517189166777 27.114842869457856 19.299482901368126 20 29.2167943558704 26.759591779430732 26.654459762483647 17.369154102215216 21 25.37778640848036 26.34647707695598 30.48461103449905 17.791125480064608 22 24.63697471714403 21.583717887991266 30.92865849578225 22.850648899082447 23 21.392052872383836 26.81171495413554 29.610457175022336 22.18577499845828 24 21.363809918689157 25.7235247731051 34.42160005353368 18.49106525467206 25 20.733116224510816 26.370554112974435 31.800877007677098 21.095452654837647 26 20.049479293092972 31.76699202374376 27.37447466794028 20.809054015222987 27 18.997831098608255 31.926182562977523 29.971022270274243 19.104964068139978 28 17.916529442869194 28.07972844777251 34.65813889103927 19.345603218319017 29 18.417784466572282 26.10596913678249 35.219291282276025 20.2569551143692 30 20.163796010428573 27.74825917125136 32.569078787672034 19.518866030648034 31 25.869692719288 26.35638343237502 28.342640496393695 19.431283351943286 32 26.68158743113115 27.097326333716904 27.638830026622514 18.582256208529436 33 25.752161356816426 26.057093409715048 28.041939966174063 20.148805267294463 34 20.756340395493197 28.510851723509028 28.898938117425082 21.833869763572693 35 21.1406216992483 27.283349319085676 30.526073396252905 21.049955585413123 36 26.570026123912104 25.83931760300314 28.53994754223978 19.050708730844978 37 21.555114106781325 30.15619239060694 28.91878363076455 19.369909871847188 38 22.010937666062663 30.322763492652893 26.102065639117377 21.564233202167067 39 21.865360164904736 28.96139408006697 28.00359384205202 21.169651912976274 40 23.748486164560966 26.66164351028752 27.936873554229752 21.652996770921764 41 20.532364916019034 25.37234119325003 28.78439178257977 25.310902108151158 42 22.332664599671713 26.17141012705065 27.7547540665261 23.74117120675154 43 22.536335330786986 26.193879840501115 28.02002789524718 23.24975693346472 44 20.984777015156066 28.280840583779554 28.795118200533498 21.939264200530875 45 19.804116582714133 31.963479007055163 26.072346572860262 22.16005783737045 46 22.7620165403333 29.40475268882104 27.580638389161006 20.252592381684657 47 21.30817687633588 27.399371766493424 28.792887630439147 22.499563726731544 48 23.319298236406315 25.89973981055899 29.772731149386527 21.00823080364816 49 22.714616925828295 24.6338912820136 30.634256045829027 22.01723574632907 50 21.12966566378486 29.731695220150705 28.180104102018404 20.95853501404603 51 19.968358707161574 31.130000249299012 27.687508938681628 21.21413210485779 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2228.0 1 4074.0 2 5920.0 3 17134.5 4 28349.0 5 20776.5 6 13204.0 7 12857.0 8 12510.0 9 12845.5 10 13181.0 11 12659.0 12 12137.0 13 12140.5 14 12144.0 15 11240.0 16 10336.0 17 9805.5 18 9275.0 19 10293.0 20 11311.0 21 12555.0 22 13799.0 23 16761.0 24 19723.0 25 23752.0 26 28882.0 27 29983.0 28 38083.5 29 46184.0 30 52297.0 31 58410.0 32 70759.5 33 83109.0 34 91399.0 35 99689.0 36 106761.0 37 113833.0 38 132932.0 39 152031.0 40 172996.0 41 193961.0 42 215323.0 43 236685.0 44 243796.0 45 250907.0 46 243198.5 47 235490.0 48 229298.5 49 223107.0 50 213535.5 51 203964.0 52 191610.5 53 179257.0 54 170273.0 55 161289.0 56 152401.5 57 143514.0 58 132359.0 59 121204.0 60 111247.0 61 101290.0 62 89558.0 63 77826.0 64 65023.5 65 52221.0 66 43632.5 67 35044.0 68 28679.5 69 22315.0 70 18995.0 71 15675.0 72 11887.0 73 8099.0 74 6159.5 75 3894.0 76 3568.0 77 2627.0 78 1686.0 79 1403.0 80 1120.0 81 846.0 82 572.0 83 388.5 84 205.0 85 139.0 86 73.0 87 57.5 88 42.0 89 35.5 90 29.0 91 23.5 92 18.0 93 16.0 94 14.0 95 13.0 96 12.0 97 8.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3048548.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.865456115102875 #Duplication Level Percentage of deduplicated Percentage of total 1 82.31151472740639 13.059097246753101 2 8.292003748026938 2.631128431411799 3 2.389813883009742 1.13746461852464 4 1.0346451603614957 0.6566046954567555 5 0.5834914949148012 0.4628679353053276 6 0.4215911666527684 0.4013241691826712 7 0.2738043973740407 0.3040822155462023 8 0.21717328028358307 0.27564425181696994 9 0.17533210731709584 0.25035514687871024 >10 1.7018441218721554 6.229979711351688 >50 0.7222586302433149 8.428947613295263 >100 1.856575281417243 63.40240675054426 >500 0.017458000980447138 1.6710415813403772 >1k 0.0022861667950585538 0.5639163566850138 >5k 0.0 0.0 >10k+ 2.0783334500532307E-4 0.5251392759072349 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15926 0.5224126370980545 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCG 3140 0.10299985435689384 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.280250138754581E-5 0.0 0.0 0.02709486614611284 0.0 2 3.280250138754581E-5 0.0 0.0 0.09598011905995904 0.0 3 3.280250138754581E-5 0.0 0.0 0.1341950331764499 0.0 4 3.280250138754581E-5 0.0 0.0 0.22938789220310785 0.0 5 3.280250138754581E-5 0.0 0.0 0.4427353612277058 0.0 6 3.280250138754581E-5 0.0 0.0 0.5885752823967344 0.0 7 3.280250138754581E-5 0.0 0.0 0.6879340590996107 0.0 8 3.280250138754581E-5 0.0 0.0 0.8521105785442775 0.0 9 3.280250138754581E-5 0.0 0.0 0.9052506307921017 0.0 10 3.280250138754581E-5 0.0 0.0 1.1232888575151188 0.0 11 6.560500277509162E-5 0.0 0.0 1.2806424566711758 0.0 12 6.560500277509162E-5 0.0 0.0 1.4634835994053563 0.0 13 6.560500277509162E-5 0.0 0.0 1.5217408418696377 0.0 14 6.560500277509162E-5 0.0 0.0 1.5481796579879996 0.0 15 6.560500277509162E-5 0.0 0.0 1.5935455174069755 0.0 16 6.560500277509162E-5 0.0 0.0 1.6755517708758398 0.0 17 6.560500277509162E-5 0.0 0.0 1.7714662849330238 0.0 18 6.560500277509162E-5 0.0 0.0 1.895098912662684 0.0 19 6.560500277509162E-5 0.0 0.0 1.9736609034858563 0.0 20 6.560500277509162E-5 0.0 0.0 2.049861114209125 0.0 21 6.560500277509162E-5 0.0 0.0 2.145710023263534 0.0 22 6.560500277509162E-5 0.0 0.0 2.246446505024687 0.0 23 6.560500277509162E-5 0.0 0.0 2.354432339592488 0.0 24 6.560500277509162E-5 0.0 0.0 2.4338471954517362 0.0 25 6.560500277509162E-5 0.0 0.0 2.5020107933350566 0.0 26 6.560500277509162E-5 0.0 0.0 2.5722081463044044 0.0 27 6.560500277509162E-5 0.0 0.0 2.653787967255231 0.0 28 6.560500277509162E-5 0.0 0.0 2.732415563081178 0.0 29 6.560500277509162E-5 0.0 0.0 2.8318399447868297 0.0 30 6.560500277509162E-5 0.0 0.0 2.936676739221426 0.0 31 9.840750416263743E-5 0.0 0.0 3.0263915805163637 0.0 32 9.840750416263743E-5 0.0 0.0 3.1112844541073326 0.0 33 1.3121000555018324E-4 0.0 0.0 3.1961445251969134 0.0 34 1.3121000555018324E-4 0.0 0.0 3.2948800543734262 0.0 35 1.3121000555018324E-4 0.0 0.0 3.400176083827448 0.0 36 1.3121000555018324E-4 0.0 0.0 3.496484227901283 0.0 37 1.3121000555018324E-4 0.0 0.0 3.597122302158273 0.0 38 1.3121000555018324E-4 0.0 0.0 3.7133415645743484 0.0 39 1.3121000555018324E-4 0.0 0.0 3.9008734650069474 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAGCGC 55 1.8189894E-12 45.0 35 CGCGAAA 20 7.035124E-4 45.0 19 CCCGTAG 40 6.8212103E-9 45.0 37 CCCGTAA 20 7.035124E-4 45.0 18 CGTAGCA 35 1.2128112E-7 45.0 39 CGCTAAT 25 3.8923285E-5 45.0 39 CTATTCG 45 3.8562575E-10 45.0 43 TTACGTC 25 3.8923285E-5 45.0 32 GACGATT 50 2.1827873E-11 45.0 30 TAGTACG 40 6.8212103E-9 45.0 43 CCCGGTA 30 2.1666874E-6 44.999996 19 GCGTATC 30 2.1666874E-6 44.999996 30 CGCTTAT 30 2.1666874E-6 44.999996 23 CGGTCTA 380 0.0 43.223686 31 TTACGAT 65 0.0 41.538464 13 CCGCGTA 55 6.184564E-11 40.909092 42 TAGCACG 50 1.0822987E-9 40.5 1 CGTTTTT 8495 0.0 40.44438 1 ATATCGG 95 0.0 40.26316 2 TACGGGA 1415 0.0 40.229683 4 >>END_MODULE