##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547498_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 6893782 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.514159861742073 31.0 31.0 33.0 30.0 34.0 2 31.93689690216488 31.0 31.0 34.0 30.0 34.0 3 31.887972233528707 33.0 31.0 34.0 30.0 34.0 4 35.723137459235005 37.0 35.0 37.0 35.0 37.0 5 35.71339317083134 37.0 35.0 37.0 33.0 37.0 6 35.793003463120826 37.0 35.0 37.0 35.0 37.0 7 36.06943329510565 37.0 35.0 37.0 35.0 37.0 8 36.07032409786094 37.0 35.0 37.0 35.0 37.0 9 37.91821107775093 39.0 38.0 39.0 35.0 39.0 10 37.42976960977298 39.0 37.0 39.0 35.0 39.0 11 37.09588176707648 39.0 37.0 39.0 33.0 39.0 12 36.69999065824826 39.0 35.0 39.0 33.0 39.0 13 36.534227656168994 39.0 35.0 39.0 32.0 39.0 14 37.64812348287196 40.0 36.0 41.0 33.0 41.0 15 37.7577634453773 40.0 36.0 41.0 33.0 41.0 16 37.8000740377343 40.0 36.0 41.0 33.0 41.0 17 37.70930296316303 40.0 36.0 41.0 33.0 41.0 18 37.54211751981713 39.0 36.0 41.0 32.0 41.0 19 37.461804565331484 39.0 36.0 41.0 32.0 41.0 20 37.29392385776052 39.0 35.0 41.0 32.0 41.0 21 37.207474358777226 39.0 35.0 41.0 32.0 41.0 22 37.13367031333454 39.0 35.0 41.0 32.0 41.0 23 37.014847147763014 39.0 35.0 41.0 32.0 41.0 24 36.870195779326934 39.0 35.0 41.0 31.0 41.0 25 36.706089777715626 38.0 35.0 41.0 31.0 41.0 26 36.67843442104784 38.0 35.0 41.0 31.0 41.0 27 36.62028158128586 38.0 35.0 41.0 31.0 41.0 28 36.55737489233051 38.0 35.0 41.0 31.0 41.0 29 36.45407223495028 38.0 35.0 41.0 31.0 41.0 30 36.359409972639114 38.0 35.0 40.0 30.0 41.0 31 36.23897985169824 38.0 35.0 41.0 30.0 41.0 32 36.06810441641468 38.0 35.0 41.0 30.0 41.0 33 35.883650077707706 38.0 35.0 41.0 29.0 41.0 34 35.638001317709204 38.0 35.0 41.0 27.0 41.0 35 35.379062030101906 38.0 34.0 41.0 26.0 41.0 36 35.242367397170376 38.0 34.0 40.0 25.0 41.0 37 35.18829852757166 38.0 34.0 40.0 25.0 41.0 38 35.01942460611606 38.0 34.0 40.0 24.0 41.0 39 34.88202208889112 38.0 34.0 40.0 24.0 41.0 40 34.70361813007722 38.0 34.0 40.0 23.0 41.0 41 34.58035139492372 37.0 34.0 40.0 23.0 41.0 42 34.53123524938851 37.0 33.0 40.0 23.0 41.0 43 34.40859574613761 37.0 33.0 40.0 23.0 41.0 44 34.24296300637299 37.0 33.0 40.0 23.0 41.0 45 34.13753742140381 37.0 33.0 40.0 23.0 41.0 46 34.06319129325529 36.0 33.0 40.0 23.0 41.0 47 33.97366525370254 36.0 33.0 40.0 22.0 41.0 48 33.81964529774803 36.0 33.0 40.0 22.0 41.0 49 33.70020360376931 36.0 33.0 40.0 21.0 41.0 50 33.59707327559821 35.0 33.0 40.0 21.0 41.0 51 33.22979084630178 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 14.0 10 20.0 11 35.0 12 36.0 13 65.0 14 125.0 15 337.0 16 781.0 17 1863.0 18 3870.0 19 7127.0 20 12252.0 21 19554.0 22 29086.0 23 41677.0 24 60382.0 25 88202.0 26 118654.0 27 138059.0 28 143928.0 29 151563.0 30 168035.0 31 197997.0 32 240671.0 33 310217.0 34 505795.0 35 652531.0 36 535804.0 37 699179.0 38 1035318.0 39 1730163.0 40 438.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.310435694079096 23.26545864084475 27.57654651684663 16.84755914822952 2 33.18542709937738 24.946799884301534 28.783199120598823 13.084573895722261 3 28.606257058897423 24.9834125883296 32.996503225660454 13.413827127112521 4 25.485183604587437 27.12776528181483 32.66973049046227 14.717320623135457 5 22.629015538930588 32.21545154749599 31.328202719494175 13.827330194079243 6 22.35883002972824 40.39161667717372 27.087990307787514 10.16156298531053 7 86.7182919332233 3.335426040452106 8.449657967136181 1.4966240591884106 8 87.31929730298985 2.6130504271820607 8.49139122763093 1.5762610421971568 9 82.56396851539547 5.194376613591785 9.657877200062318 2.5837776709504303 10 43.86171480328215 31.240761602267085 14.928046752856414 9.969476841594354 11 32.228927459557035 22.35945378023268 27.13918136662865 18.272437393581637 12 29.79339932710376 19.73790293919941 31.245809629605347 19.222888104091485 13 25.75742894103701 22.0111253880671 32.236586535518526 19.99485913537736 14 21.110879340251838 25.728823452786877 33.21900808583735 19.941289121123933 15 20.72809961208521 24.17197120535578 36.03371850168746 19.066210680871546 16 25.943988365167336 22.84114873374296 32.50693160880341 18.707931292286297 17 26.093470898847688 22.457542173512305 29.451772626404487 21.99721430123552 18 25.64714114835659 23.67121559689587 31.32406855917405 19.35757469557349 19 27.160287342999823 24.131195329356224 28.55479038936827 20.153726938275682 20 27.715628373511088 25.356923093883733 28.149163985748316 18.778284546856863 21 27.90492939869581 23.24681865483997 30.36173757742847 18.48651436903575 22 26.735730836861393 20.582562662991084 31.20768831970608 21.474018180441448 23 24.77610983347022 22.998290343384806 30.83873264341692 21.38686717972805 24 23.981973900538193 23.631498646171288 31.77385069617809 20.612676757112425 25 24.66643128546856 23.804466111635094 29.92998618175045 21.599116421145897 26 23.508474738539746 25.612965423043548 28.449333036640844 22.42922680177586 27 22.28685212268099 24.992406200254084 31.303673368261425 21.4170683088035 28 21.47648417080784 25.23819291065485 31.89268242018677 21.39264049835054 29 22.748848164911507 24.488053147024377 31.72558981412525 21.03750887393886 30 23.901437556337 23.347532602568517 31.469300885928796 21.281728955165686 31 26.1854233278627 22.964564298667987 29.801537095312845 21.048475278156463 32 27.19035791964411 23.868552849509893 28.58507855339783 20.356010677448168 33 26.41445580959769 23.65132810988221 28.446243295770014 21.487972784750085 34 24.007605694522976 24.84057372281282 29.496203970476582 21.655616612187618 35 23.734083845413156 25.340517005034393 29.542347001979465 21.383052147572986 36 26.235526449777495 25.601955501348893 27.700440774019253 20.462077274854355 37 24.774383640213745 26.608311664047395 26.915516040396987 21.701788655341872 38 24.50144202413131 27.13877520350948 25.939941239801318 22.41984153255789 39 24.149748280406893 25.878973254448717 26.828756696977074 23.142521768167313 40 25.313724744994836 24.704218961377077 27.404391377621167 22.577664916006917 41 22.974645847518822 24.81045962869148 28.52438617873324 23.690508345056458 42 23.481203786252596 25.321891524855296 27.981012454411818 23.21589223448029 43 23.307365971247712 24.536183476646055 28.448027512329226 23.708423039777003 44 22.862689884884666 24.889719460232424 29.172129318855745 23.07546133602716 45 23.176465400269404 25.769323718098423 27.956628161435916 23.097582720196257 46 24.287611647713838 25.571623819842287 27.99736051995842 22.143404012485455 47 23.621939307045103 25.57936993075789 28.839438206778222 21.959252555418782 48 23.466552902311097 25.496091985502296 29.280023650298197 21.75733146188841 49 23.953165330728474 24.524245182107588 29.389063941969734 22.133525545194203 50 23.023153328608302 25.30915540990417 29.053732769617607 22.61395849186992 51 22.27674156217879 26.500417332604947 28.646829853337398 22.576011251878867 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6858.0 1 10172.0 2 13486.0 3 73487.0 4 133488.0 5 92215.5 6 50943.0 7 46836.5 8 42730.0 9 43010.0 10 43290.0 11 43048.0 12 42806.0 13 41147.5 14 39489.0 15 37793.0 16 36097.0 17 34472.0 18 32847.0 19 32089.5 20 31332.0 21 32379.5 22 33427.0 23 36158.5 24 38890.0 25 43041.0 26 57259.0 27 67326.0 28 72885.0 29 78444.0 30 92234.5 31 106025.0 32 115669.0 33 125313.0 34 144023.0 35 162733.0 36 180138.0 37 197543.0 38 213978.0 39 230413.0 40 257205.5 41 283998.0 42 312730.5 43 341463.0 44 357607.0 45 373751.0 46 389905.0 47 406059.0 48 417473.5 49 428888.0 50 431597.5 51 434307.0 52 426791.0 53 419275.0 54 416294.5 55 413314.0 56 414073.5 57 414833.0 58 405701.5 59 396570.0 60 380741.5 61 364913.0 62 333747.0 63 302581.0 64 269664.0 65 236747.0 66 205222.0 67 173697.0 68 148677.0 69 123657.0 70 105828.5 71 88000.0 72 72275.5 73 56551.0 74 45290.0 75 26985.0 76 19941.0 77 15085.0 78 10229.0 79 7483.5 80 4738.0 81 3744.5 82 2751.0 83 2152.5 84 1554.0 85 1091.5 86 629.0 87 454.0 88 279.0 89 249.5 90 220.0 91 154.5 92 89.0 93 58.5 94 28.0 95 20.0 96 12.0 97 8.0 98 4.0 99 3.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 6893782.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.17043690060394 #Duplication Level Percentage of deduplicated Percentage of total 1 83.09187193824049 15.098156160068616 2 6.497172686238185 2.3611293265523665 3 1.9888813557893827 1.0841652953447576 4 1.0096932392392812 0.7338626917025501 5 0.6695689206505883 0.6083179911643499 6 0.4727978092241101 0.5154565655550282 7 0.34467504904422364 0.43840273609094427 8 0.27948977523848273 0.40627610602678615 9 0.22864567002261493 0.37391325477680104 >10 2.5433875677519717 11.105679767913216 >50 1.2454113636321524 16.71476675186676 >100 1.619779489929422 47.591124993114704 >500 0.005723220430250147 0.6801169379084342 >1k 0.0026600883547192307 0.8961010053741777 >5k 1.6121747604358973E-4 0.18619215397706027 >10k+ 8.060873802179487E-5 1.2063382625632992 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 82361 1.1947143092137233 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.8023302738612855E-5 0.0 0.0 0.008413378897098863 0.0 2 5.8023302738612855E-5 0.0 0.0 0.027546562975156452 0.0 3 5.8023302738612855E-5 0.0 0.0 0.05063983746512437 0.0 4 5.8023302738612855E-5 0.0 0.0 0.08049282672414068 0.0 5 5.8023302738612855E-5 0.0 0.0 0.1527028269823444 0.0 6 7.252912842326606E-5 0.0 0.0 0.3084518773584659 0.0 7 7.252912842326606E-5 0.0 0.0 0.4092673658668058 0.0 8 7.252912842326606E-5 0.0 0.0 0.5901405063287467 0.0 9 7.252912842326606E-5 0.0 0.0 0.7205333734080944 0.0 10 7.252912842326606E-5 0.0 0.0 0.8695227090151676 0.0 11 7.252912842326606E-5 0.0 0.0 0.9910089991241382 0.0 12 7.252912842326606E-5 0.0 0.0 1.0720530472242957 0.0 13 7.252912842326606E-5 0.0 0.0 1.1172096825806213 0.0 14 7.252912842326606E-5 0.0 0.0 1.150892209820386 0.0 15 7.252912842326606E-5 0.0 0.0 1.1741160367415158 0.0 16 7.252912842326606E-5 0.0 0.0 1.2067396387063007 0.0 17 7.252912842326606E-5 0.0 0.0 1.2429896970922492 0.0 18 8.703495410791928E-5 0.0 0.0 1.288044791668782 0.0 19 8.703495410791928E-5 0.0 0.0 1.3189422003770934 0.0 20 8.703495410791928E-5 0.0 0.0 1.3556274335335814 1.4505825684653214E-5 21 8.703495410791928E-5 0.0 0.0 1.3968384843036812 1.4505825684653214E-5 22 8.703495410791928E-5 0.0 0.0 1.4466950071818343 1.4505825684653214E-5 23 8.703495410791928E-5 0.0 0.0 1.4992206019859635 1.4505825684653214E-5 24 8.703495410791928E-5 0.0 0.0 1.5431877596361474 1.4505825684653214E-5 25 8.703495410791928E-5 0.0 0.0 1.58219392490218 1.4505825684653214E-5 26 8.703495410791928E-5 0.0 0.0 1.6230278242044787 1.4505825684653214E-5 27 8.703495410791928E-5 0.0 0.0 1.6708970489638344 1.4505825684653214E-5 28 1.015407797925725E-4 0.0 0.0 1.7157200503294128 1.4505825684653214E-5 29 1.015407797925725E-4 0.0 0.0 1.7687388432068203 1.4505825684653214E-5 30 1.015407797925725E-4 0.0 0.0 1.8370757880072215 2.9011651369306427E-5 31 1.015407797925725E-4 0.0 0.0 1.891472634324671 2.9011651369306427E-5 32 1.015407797925725E-4 0.0 0.0 1.952135997337891 2.9011651369306427E-5 33 1.015407797925725E-4 0.0 0.0 2.008462118471399 2.9011651369306427E-5 34 1.015407797925725E-4 0.0 0.0 2.0726649029516744 2.9011651369306427E-5 35 1.015407797925725E-4 1.4505825684653214E-5 0.0 2.143424320641413 2.9011651369306427E-5 36 1.015407797925725E-4 1.4505825684653214E-5 0.0 2.2091937342956305 2.9011651369306427E-5 37 1.015407797925725E-4 1.4505825684653214E-5 0.0 2.2822595782692288 2.9011651369306427E-5 38 1.015407797925725E-4 1.4505825684653214E-5 0.0 2.3736752917339135 2.9011651369306427E-5 39 1.015407797925725E-4 1.4505825684653214E-5 0.0 2.5387660938509513 2.9011651369306427E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 38010 0.0 42.05801 1 TACGGGA 2580 0.0 39.156975 4 TAGACGG 995 0.0 37.989952 2 ATAGGGA 8410 0.0 37.45541 4 GTAGGGA 8895 0.0 37.310287 4 TAGGGAC 7405 0.0 37.28224 5 TAACGGG 1850 0.0 37.094593 3 AACGGGA 2150 0.0 36.94186 4 CGGTCTA 725 0.0 36.931038 31 ACGGGAT 2740 0.0 36.788322 5 TAGGGAT 8650 0.0 36.70231 5 GACCGAT 3105 0.0 36.449276 9 GGGCGAT 9145 0.0 36.19191 7 TATGGGA 6965 0.0 36.180904 4 AAGGGAT 9205 0.0 36.07822 5 TAAGGGA 8780 0.0 36.030754 4 AGGGATT 12145 0.0 35.86661 6 CTACGGG 1295 0.0 35.791504 3 ATAACGG 550 0.0 35.590908 2 TACGGGC 925 0.0 35.51351 4 >>END_MODULE