SRR1547488_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547488_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1252678
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4914	0.392279580227321	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1368	0.10920603698636043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGT	20	7.033529E-4	45.000004	21
GGTCGAC	20	7.033529E-4	45.000004	24
CGTTGGA	20	7.033529E-4	45.000004	11
GGCCGTA	35	1.2120472E-7	45.000004	44
TGTTACG	75	0.0	45.000004	1
GCGATCG	20	7.033529E-4	45.000004	9
CGCGTAG	20	7.033529E-4	45.000004	3
TATCGTG	40	6.8157533E-9	45.000004	1
TACGTCG	20	7.033529E-4	45.000004	13
TACGTAA	20	7.033529E-4	45.000004	44
TCTATCG	20	7.033529E-4	45.000004	31
ACGCGTC	20	7.033529E-4	45.000004	28
CGCGTAC	30	2.1656597E-6	44.999996	32
CGTTAGG	265	0.0	44.150944	2
ACGTTAG	90	0.0	42.5	1
CGGGATA	330	0.0	42.272728	6
ATTAGCG	80	0.0	42.187504	1
TCGATAG	75	0.0	42.000004	1
CGTTTTT	2780	0.0	41.357914	1
TAGCACG	60	3.6379788E-12	41.249996	1