##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547484_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2702352 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.499106334037904 31.0 31.0 33.0 30.0 34.0 2 31.905701773862177 31.0 31.0 34.0 30.0 34.0 3 31.714146417639153 31.0 31.0 34.0 30.0 34.0 4 35.619868544142285 37.0 35.0 37.0 33.0 37.0 5 35.65256006619419 37.0 35.0 37.0 33.0 37.0 6 35.74434492619763 37.0 35.0 37.0 33.0 37.0 7 36.0622602088847 37.0 35.0 37.0 35.0 37.0 8 36.07401737449452 37.0 35.0 37.0 35.0 37.0 9 37.922026072103115 39.0 38.0 39.0 35.0 39.0 10 37.4104683623747 39.0 37.0 39.0 35.0 39.0 11 37.10603503910667 39.0 37.0 39.0 33.0 39.0 12 36.84947075732547 39.0 35.0 39.0 33.0 39.0 13 36.75156567316175 39.0 35.0 39.0 33.0 39.0 14 37.91806063754833 40.0 37.0 41.0 33.0 41.0 15 37.988482995553504 40.0 37.0 41.0 33.0 41.0 16 38.023380743885326 40.0 37.0 41.0 33.0 41.0 17 37.91887548328271 40.0 36.0 41.0 33.0 41.0 18 37.706315461494285 39.0 36.0 41.0 33.0 41.0 19 37.57748990509008 39.0 36.0 41.0 33.0 41.0 20 37.376957183964194 39.0 35.0 41.0 32.0 41.0 21 37.26863561815781 39.0 35.0 41.0 32.0 41.0 22 37.220453146000224 39.0 35.0 41.0 32.0 41.0 23 37.09964616008573 39.0 35.0 41.0 32.0 41.0 24 36.9565175077118 39.0 35.0 41.0 32.0 41.0 25 36.82818892579501 38.0 35.0 41.0 31.0 41.0 26 36.78676316038769 39.0 35.0 41.0 31.0 41.0 27 36.733927334410915 39.0 35.0 41.0 31.0 41.0 28 36.67863734998253 38.0 35.0 41.0 31.0 41.0 29 36.57812860796817 38.0 35.0 41.0 31.0 41.0 30 36.46880717241869 38.0 35.0 41.0 31.0 41.0 31 36.33817911212159 38.0 35.0 41.0 30.0 41.0 32 36.093649531963266 38.0 35.0 41.0 30.0 41.0 33 35.84746065649479 38.0 35.0 41.0 28.0 41.0 34 35.53849424501323 38.0 35.0 41.0 26.0 41.0 35 35.20856979401647 38.0 34.0 41.0 24.0 41.0 36 35.04484389894433 38.0 34.0 41.0 23.0 41.0 37 34.98281645026259 38.0 34.0 41.0 23.0 41.0 38 34.79722848836865 38.0 34.0 40.0 23.0 41.0 39 34.67433258139576 38.0 34.0 40.0 22.0 41.0 40 34.51574443299763 38.0 34.0 40.0 21.0 41.0 41 34.40187140683375 38.0 34.0 40.0 21.0 41.0 42 34.35624707662066 38.0 33.0 40.0 21.0 41.0 43 34.234501648933964 38.0 33.0 40.0 20.0 41.0 44 34.07869330124277 38.0 33.0 40.0 19.0 41.0 45 33.95802323309473 37.0 33.0 40.0 20.0 41.0 46 33.88978711877653 37.0 33.0 40.0 20.0 41.0 47 33.81167183253699 37.0 33.0 40.0 20.0 41.0 48 33.654892848896075 37.0 33.0 40.0 19.0 41.0 49 33.55128680497582 36.0 33.0 40.0 18.0 41.0 50 33.4495946494017 36.0 33.0 40.0 18.0 41.0 51 33.08681659532141 36.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 6.0 11 11.0 12 10.0 13 23.0 14 37.0 15 100.0 16 273.0 17 666.0 18 1446.0 19 2787.0 20 4849.0 21 7670.0 22 11669.0 23 17107.0 24 25912.0 25 39650.0 26 55913.0 27 63606.0 28 63064.0 29 62383.0 30 66080.0 31 74817.0 32 88836.0 33 111626.0 34 172517.0 35 230265.0 36 199310.0 37 261992.0 38 406244.0 39 733307.0 40 173.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.153176196143214 22.7350841045134 25.868576706513437 19.243162992829948 2 35.89906126218938 23.666457959584836 27.56128735264688 12.873193425578902 3 27.90280466793371 24.301312338289016 34.81992723375785 12.97595576001942 4 24.210280526001053 26.82896232615144 34.908627743536 14.052129404311502 5 22.091163549382166 30.951704293149078 33.293664185864756 13.663467971603996 6 21.13629164520388 39.47587138907145 29.786090043043984 9.601746922680688 7 84.49091754146018 3.0241064080475084 11.13448581087882 1.3504902396134923 8 85.03403701664328 2.480172827226061 11.040826657667099 1.4449634984635606 9 80.56974072955707 5.001902046809594 12.199224971432294 2.2291322522010453 10 37.31634516894912 34.337347614226424 18.132167830097636 10.21413938672682 11 27.26243657376981 24.668436976382054 31.076484484626725 16.99264196522141 12 26.1011888902704 22.46517108059942 33.507773968750186 17.925866060379995 13 23.42370646015027 24.03062221353843 33.845923847078396 18.699747479232904 14 19.192503419243682 26.88872508096651 34.75724109960508 19.161530400184727 15 18.560350391066745 25.912575415785955 37.39387022860086 18.13320396454644 16 23.287158741718326 24.59723973782838 34.886572881697134 17.229028638756162 17 22.61770487338437 24.54065939596322 32.78281289780162 20.05882283285079 18 23.181843075957538 24.94401173496273 33.4403512199743 18.43379396910543 19 24.531334185923964 25.674190482957073 31.157784034056256 18.636691297062708 20 25.43765579021534 26.023071753790774 31.301436674422874 17.237835781571018 21 24.88361989851803 24.52600549447296 33.41141346501122 17.178961141997785 22 24.21986476965251 22.147336838428156 33.16969810002546 20.463100291893877 23 21.577129848369125 25.087997418545033 33.46259110582189 19.872281627263956 24 21.025573278388602 25.68455182744513 34.85867126118285 18.43120363298342 25 22.41018194520921 26.47045980686454 32.301972503952115 18.81738574397414 26 21.4073518179719 27.37378402221472 30.635794300668458 20.583069859144924 27 20.26864005873402 26.842950141210327 33.06334629981586 19.825063500239793 28 19.770925475289676 27.053655482335387 33.74186634457687 19.433552697798063 29 20.57770416289218 25.773400356430248 33.779944285570494 19.868951195107076 30 21.381337442346517 25.482875657945375 33.99342498682629 19.142361912881817 31 23.336634161648814 25.48269063393666 31.633073707644304 19.54760149677022 32 24.06662788563444 25.400836012480983 31.485202519878978 19.047333582005603 33 22.943273119119937 25.577570945605903 30.942897150334225 20.536258784939935 34 20.986459202946175 26.920512205663805 32.114580187925185 19.97844840346483 35 21.129112713665727 27.37811358401866 31.830975387366266 19.661798314949348 36 23.37978176048124 28.432232366471872 28.997702741907787 19.190283131139097 37 22.040985038218558 28.234404696353398 29.552293705631243 20.172316559796798 38 22.045425614427728 28.828516788338455 29.03193218352013 20.094125413713684 39 21.441840293196446 28.367955025844154 28.580251573444173 21.60995310751523 40 23.131997608009616 27.429513253639794 29.346806041551954 20.09168309679864 41 20.630695038988257 27.51062777906061 30.225818102156936 21.632859079794194 42 22.095826154401795 27.705088012220465 28.778042238760904 21.421043594616837 43 21.635153377502263 27.16252360906351 29.5137717070167 21.68855130641752 44 21.63171193094016 28.0716945830891 29.470106040959877 20.826487445010862 45 21.462414962965596 28.074025885598914 28.862339177131624 21.601219974303866 46 21.644034529920603 28.206207037425173 29.078558233716407 21.071200198937813 47 21.296337412742677 28.33650094436254 30.22933355832253 20.137828084572256 48 21.697987530862004 27.836788101624066 30.122278666879815 20.342945700634115 49 22.18567381303398 27.254184502981104 29.970706998940184 20.58943468504473 50 20.84761718680616 28.10144644369053 30.541025003404442 20.509911366098866 51 20.234299602716447 28.314779125739353 30.143334399071627 21.307586872472573 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2643.0 1 3733.5 2 4824.0 3 39266.5 4 73709.0 5 51905.0 6 30101.0 7 27433.0 8 24765.0 9 24991.5 10 25218.0 11 24732.5 12 24247.0 13 23428.0 14 22609.0 15 21338.0 16 20067.0 17 19164.5 18 18262.0 19 17651.5 20 17041.0 21 17286.5 22 17532.0 23 18381.0 24 19230.0 25 21625.0 26 27581.5 27 31143.0 28 36194.0 29 41245.0 30 48213.5 31 55182.0 32 63796.0 33 72410.0 34 79537.0 35 86664.0 36 93708.0 37 100752.0 38 108967.5 39 117183.0 40 127324.0 41 137465.0 42 147645.0 43 157825.0 44 161535.5 45 165246.0 46 168875.0 47 172504.0 48 173533.0 49 174562.0 50 169799.0 51 165036.0 52 159675.0 53 154314.0 54 146944.0 55 139574.0 56 134275.0 57 128976.0 58 122348.5 59 115721.0 60 107963.0 61 100205.0 62 88449.5 63 76694.0 64 67976.5 65 59259.0 66 50197.5 67 41136.0 68 35310.5 69 29485.0 70 25318.5 71 21152.0 72 17801.0 73 14450.0 74 11484.5 75 7064.0 76 5609.0 77 4295.5 78 2982.0 79 2188.0 80 1394.0 81 1043.5 82 693.0 83 526.5 84 360.0 85 272.0 86 184.0 87 127.0 88 70.0 89 57.5 90 45.0 91 33.5 92 22.0 93 18.0 94 14.0 95 10.5 96 7.0 97 4.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2702352.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.838420931719924 #Duplication Level Percentage of deduplicated Percentage of total 1 78.6045558504962 17.9520393366452 2 5.5329989778099025 2.5272991933999727 3 2.2588521984531895 1.5476585199244468 4 1.4382693566144178 1.3139120391821628 5 1.0039862894280418 1.1464730743816602 6 0.7807181813953622 1.0698222273452491 7 0.6201825925133084 0.9914793771640988 8 0.5246083338129729 0.9584980761527131 9 0.42986850975793744 0.8835766174028638 >10 6.998632163694017 39.43461432517371 >50 1.6700455553672091 25.542335734715504 >100 0.13284347375459368 4.105544794932398 >500 0.003452179813316341 0.5243390764309426 >1k 8.219475745991288E-4 0.32325357640487007 >5k 0.0 0.0 >10k+ 1.6438951491982575E-4 1.6791540307442294 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44725 1.6550397579589926 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3465 0.12822163803975203 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.400960348614836E-5 0.0 0.0 0.014838925498972746 0.0 2 7.400960348614836E-5 0.0 0.0 0.04307358922893835 0.0 3 7.400960348614836E-5 0.0 0.0 0.07508274273669752 0.0 4 7.400960348614836E-5 0.0 0.0 0.12204183614865866 0.0 5 7.400960348614836E-5 0.0 0.0 0.22672842027981552 0.0 6 7.400960348614836E-5 0.0 0.0 0.44076419356175656 0.0 7 1.1101440522922254E-4 0.0 0.0 0.5779779984250757 0.0 8 1.1101440522922254E-4 0.0 0.0 0.798156568796367 0.0 9 1.1101440522922254E-4 0.0 0.0 0.9252310579820837 0.0 10 1.4801920697229672E-4 0.0 0.0 1.0641100789238411 0.0 11 1.4801920697229672E-4 0.0 0.0 1.1716090279874716 0.0 12 1.4801920697229672E-4 0.0 0.0 1.2465067467154538 0.0 13 1.4801920697229672E-4 0.0 0.0 1.292022652859435 0.0 14 1.4801920697229672E-4 0.0 0.0 1.3231066863236174 0.0 15 1.4801920697229672E-4 0.0 0.0 1.3476408698792754 0.0 16 1.4801920697229672E-4 0.0 0.0 1.3828694411386822 0.0 17 1.4801920697229672E-4 0.0 0.0 1.4298285345506432 0.0 18 1.4801920697229672E-4 0.0 0.0 1.4872229820541514 0.0 19 1.4801920697229672E-4 0.0 0.0 1.5251899086425456 0.0 20 1.4801920697229672E-4 0.0 0.0 1.5660062049651562 0.0 21 1.4801920697229672E-4 0.0 0.0 1.613298341592805 0.0 22 1.4801920697229672E-4 0.0 0.0 1.6682874769830134 0.0 23 1.4801920697229672E-4 0.0 0.0 1.727569169375418 0.0 24 1.4801920697229672E-4 0.0 0.0 1.7790428486000343 0.0 25 1.4801920697229672E-4 0.0 0.0 1.824188706726585 0.0 26 1.4801920697229672E-4 0.0 0.0 1.8695565936635938 0.0 27 1.4801920697229672E-4 0.0 0.0 1.9259519115200388 0.0 28 1.4801920697229672E-4 0.0 0.0 1.9792018212283227 0.0 29 1.4801920697229672E-4 0.0 0.0 2.0395936576730196 0.0 30 1.4801920697229672E-4 0.0 0.0 2.113085193934765 0.0 31 1.4801920697229672E-4 0.0 0.0 2.172403891128913 0.0 32 1.4801920697229672E-4 0.0 0.0 2.243416105673872 0.0 33 1.4801920697229672E-4 0.0 0.0 2.308063494319023 0.0 34 1.4801920697229672E-4 0.0 0.0 2.3733769693955487 0.0 35 1.4801920697229672E-4 0.0 0.0 2.450383961822886 0.0 36 1.4801920697229672E-4 0.0 0.0 2.517621686590052 0.0 37 1.4801920697229672E-4 0.0 0.0 2.592001338093631 0.0 38 1.4801920697229672E-4 0.0 0.0 2.6822560495449888 0.0 39 1.4801920697229672E-4 0.0 0.0 2.8376762168659004 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 22420 0.0 43.04304 1 TACGGGA 1115 0.0 39.753365 4 CGTTAGG 400 0.0 39.375 2 ACGGGAT 1180 0.0 38.51695 5 ACGGGTA 170 0.0 38.38235 5 TCGTAAG 165 0.0 38.181816 1 GGGCGAT 3725 0.0 38.174496 7 TAGGGAC 2900 0.0 38.172417 5 AATACGG 155 0.0 37.741936 2 TAGGGAT 4120 0.0 37.518208 5 AGGGATT 4850 0.0 37.159794 6 ATAGGGA 3490 0.0 37.13467 4 CGGTTTT 1540 0.0 37.11039 1 TAAGGGA 4015 0.0 37.09838 4 CTACGGG 425 0.0 37.058826 3 GTAGGGA 3595 0.0 36.801113 4 TTAGGGA 3550 0.0 36.69718 4 AGGGCGA 2020 0.0 36.423267 6 CGGGATA 600 0.0 36.375004 6 ATATGCG 125 0.0 36.000004 1 >>END_MODULE