##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547478_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2238474 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.260519443156365 31.0 31.0 33.0 30.0 34.0 2 31.661538619613182 31.0 31.0 34.0 30.0 34.0 3 31.809524702989627 31.0 31.0 34.0 30.0 34.0 4 35.555829551739265 37.0 35.0 37.0 33.0 37.0 5 35.43441737540842 37.0 35.0 37.0 33.0 37.0 6 35.48583275928154 37.0 35.0 37.0 33.0 37.0 7 35.89782950349211 37.0 35.0 37.0 35.0 37.0 8 35.929726233139185 37.0 35.0 37.0 35.0 37.0 9 37.66623512267732 39.0 37.0 39.0 35.0 39.0 10 36.97241468965018 39.0 37.0 39.0 32.0 39.0 11 36.76741387212896 39.0 37.0 39.0 32.0 39.0 12 36.28384292156174 38.0 35.0 39.0 32.0 39.0 13 36.080829172016294 38.0 35.0 39.0 31.0 39.0 14 37.1874017746018 39.0 35.0 41.0 32.0 41.0 15 37.35226498051798 39.0 35.0 41.0 32.0 41.0 16 37.417343690389075 39.0 35.0 41.0 32.0 41.0 17 37.3317992525265 39.0 35.0 41.0 32.0 41.0 18 37.238399016472826 39.0 36.0 41.0 32.0 41.0 19 37.170471490846 39.0 35.0 41.0 32.0 41.0 20 37.036100486313444 39.0 35.0 41.0 32.0 41.0 21 36.986418872857136 39.0 35.0 41.0 31.0 41.0 22 36.87071594309337 39.0 35.0 41.0 31.0 41.0 23 36.7998305988812 38.0 35.0 41.0 31.0 41.0 24 36.713972107784144 38.0 35.0 40.0 31.0 41.0 25 36.60968901135327 38.0 35.0 40.0 31.0 41.0 26 36.472181941805 38.0 35.0 40.0 31.0 41.0 27 36.376100861569086 38.0 35.0 40.0 30.0 41.0 28 36.28783179969926 38.0 35.0 40.0 30.0 41.0 29 36.334694975237596 38.0 35.0 40.0 30.0 41.0 30 36.303627828601094 38.0 35.0 40.0 30.0 41.0 31 36.191972745718736 38.0 35.0 40.0 30.0 41.0 32 36.09051255453492 38.0 35.0 40.0 30.0 41.0 33 35.978724345245915 38.0 35.0 40.0 30.0 41.0 34 35.843032351503744 38.0 35.0 40.0 29.0 41.0 35 35.73651693073049 38.0 35.0 40.0 29.0 41.0 36 35.645925304470815 38.0 35.0 40.0 27.0 41.0 37 35.593042402994186 38.0 34.0 40.0 27.0 41.0 38 35.49415047929974 38.0 34.0 40.0 27.0 41.0 39 35.41230722358178 38.0 34.0 40.0 27.0 41.0 40 35.277554709145605 38.0 34.0 40.0 26.0 41.0 41 35.188326064988914 38.0 34.0 40.0 26.0 41.0 42 35.138612733496124 38.0 34.0 40.0 26.0 41.0 43 35.097369904676135 38.0 34.0 40.0 26.0 41.0 44 34.96545861153625 38.0 34.0 40.0 25.0 41.0 45 34.83976181988265 38.0 34.0 40.0 24.0 41.0 46 34.78910364828897 37.0 34.0 40.0 24.0 41.0 47 34.72816793940872 37.0 34.0 40.0 24.0 41.0 48 34.664443276982446 37.0 34.0 40.0 24.0 41.0 49 34.594574250136475 37.0 34.0 40.0 24.0 41.0 50 34.473172795395435 37.0 33.0 40.0 24.0 41.0 51 33.91221430313687 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 0.0 12 3.0 13 6.0 14 25.0 15 45.0 16 138.0 17 431.0 18 957.0 19 1886.0 20 3216.0 21 5285.0 22 8145.0 23 11938.0 24 17472.0 25 24397.0 26 32000.0 27 37927.0 28 42375.0 29 49406.0 30 58110.0 31 70878.0 32 86337.0 33 108931.0 34 167370.0 35 238023.0 36 175141.0 37 217219.0 38 316930.0 39 563536.0 40 344.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.593421232500354 25.814103715298902 26.643999438903464 13.948475613297273 2 27.95015711596382 28.28726176850837 30.27115794063277 13.49142317489504 3 28.027039849468878 26.091390831432488 32.975098214229874 12.906471104868764 4 25.4425112822396 28.894907870272334 31.21278156458373 14.449799282904335 5 23.020995553220633 33.336907196599114 29.73119187446448 13.91090537571578 6 21.626161393878153 41.366752528731624 26.47039903076828 10.536687046621939 7 88.84905520457241 3.436626916372493 6.434964176488089 1.2793537025670165 8 88.84114803209687 3.097824678776702 5.761737683797087 2.299289605329345 9 82.89790276768906 6.7385638609159635 7.728166599209997 2.6353667721849794 10 33.14744777022203 41.623311237923694 13.755218957200308 11.474022034653965 11 33.97443972992315 23.91213835854247 25.564067306566884 16.54935460496749 12 33.33194846131784 21.527612114324313 26.71873785444906 18.421701569908784 13 23.63127737914311 30.586908760164288 27.539162840399307 18.242651020293287 14 18.340351507321508 33.231790943294406 28.419807422377925 20.008050127006165 15 17.01458225559019 27.549571717160887 37.08906156604901 18.346784461199906 16 20.837275751248395 24.808775978635445 35.37878930021077 18.97515896990539 17 19.982943737564074 26.16385090914614 27.89360072978288 25.959604623506905 18 20.528940697993363 26.24037625632462 32.154762574861266 21.075920470820748 19 24.002959158784066 27.81032971569024 27.623863399798253 20.562847725727437 20 25.62433157588607 26.65516776160902 28.70678864261993 19.013712019884977 21 22.807144510054616 28.95664635818866 29.40150298819642 18.8347061435603 22 23.579411688498503 25.64505998282759 27.617251752756566 23.158276575917345 23 20.096949975742405 29.583725341460298 27.672825326539417 22.64649935625788 24 19.89270369010317 26.85771646219701 34.70793049193334 18.541649355766474 25 19.329820225743074 28.81958870194606 30.846013846933225 21.004577225377645 26 19.114673657143214 33.1552209228251 26.86982292400984 20.860282496021842 27 19.335672426840787 32.28672747595013 28.79135518214641 19.58624491506267 28 17.572953717577242 30.258962132238302 32.99466511561001 19.173419034574447 29 18.22384356485713 27.040206855205824 31.785091093307315 22.95085848662973 30 19.460400254816452 31.634676123108868 29.35441733966979 19.55050628240489 31 23.132678780276205 29.833672403610674 26.968684916599432 20.064963899513685 32 23.699850880555235 29.204717142124505 27.338981824224895 19.75645015309537 33 23.40460510151112 29.407935942074825 25.936776571896747 21.250682384517308 34 20.033469229484012 28.453893143275284 28.822894525466904 22.6897431017738 35 20.74180892876129 27.666571065824307 29.091023616981925 22.500596388432477 36 24.31183029152896 28.498119701189296 27.490736993148012 19.699313014133736 37 19.737598024368385 31.07290949101933 29.480664059533414 19.70882842507887 38 20.2090799357062 30.900068528828122 27.532059787158573 21.358791748307105 39 20.948110185778347 29.565319945641537 28.19139288640386 21.29517698217625 40 22.443235883016737 27.754890161779855 27.513073638559128 22.288800316644284 41 18.38788388875636 26.418265300378742 30.495194494106254 24.69865631675865 42 20.615160149280268 27.265047527914106 28.167716042268083 23.952076280537547 43 21.040449877907896 27.497840046388745 28.2630041715919 23.19870590411146 44 19.715082685793984 29.06104783884021 27.968830551527514 23.255038923838292 45 18.531687211913116 32.19854239986705 26.55912018634123 22.7106502018786 46 21.355619944658727 30.781326921822632 26.931427392053692 20.93162574146494 47 20.120805513041475 27.861882693299094 29.450241548483476 22.567070245175955 48 20.244773895073163 27.29895455564818 31.116689316025116 21.339582233253545 49 21.03428496377443 26.76971007927722 30.134770383752503 22.061234573195847 50 19.923260221025572 28.30231666751546 29.97653758766016 21.7978855237988 51 18.527889982193226 28.494233124887757 28.4794462656256 24.498430627293416 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1545.0 1 2495.0 2 3445.0 3 12585.5 4 21726.0 5 15186.5 6 8647.0 7 9005.0 8 9363.0 9 10456.5 10 11550.0 11 12191.0 12 12832.0 13 12776.0 14 12720.0 15 12268.0 16 11816.0 17 11990.5 18 12165.0 19 12342.5 20 12520.0 21 12180.0 22 11840.0 23 13522.5 24 15205.0 25 16616.0 26 21810.5 27 25594.0 28 32120.5 29 38647.0 30 41963.0 31 45279.0 32 53047.0 33 60815.0 34 66823.5 35 72832.0 36 75564.0 37 78296.0 38 89792.0 39 101288.0 40 119511.0 41 137734.0 42 155393.0 43 173052.0 44 182284.0 45 191516.0 46 195247.0 47 198978.0 48 200666.5 49 202355.0 50 185617.5 51 168880.0 52 150306.0 53 131732.0 54 119511.0 55 107290.0 56 97410.0 57 87530.0 58 79224.0 59 70918.0 60 65654.0 61 60390.0 62 51876.5 63 43363.0 64 36056.5 65 28750.0 66 23909.0 67 19068.0 68 15574.0 69 12080.0 70 9455.0 71 6830.0 72 6110.5 73 5391.0 74 4031.0 75 2037.5 76 1404.0 77 1286.0 78 1168.0 79 896.0 80 624.0 81 395.5 82 167.0 83 203.0 84 239.0 85 176.5 86 114.0 87 88.5 88 63.0 89 36.5 90 10.0 91 5.5 92 1.0 93 2.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2238474.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.22014702023325 #Duplication Level Percentage of deduplicated Percentage of total 1 78.10269717446818 15.011453223700347 2 9.230435880199785 3.54820669356552 3 3.2419495751958722 1.8693224240234223 4 1.6138817696032564 1.2407617954019519 5 0.9235212415332434 0.887510701928864 6 0.6114137258834037 0.7050877021000568 7 0.4406532538297134 0.5928594226485877 8 0.33228271059460096 0.5109218039927879 9 0.26104234773251717 0.4515545071733249 >10 2.60602464065868 11.664699084240253 >50 1.1952540048654907 16.86081428280069 >100 1.432616998686894 44.434076758904695 >500 0.004936006049069404 0.618241132079116 >1k 0.0030556227922810594 0.9510116237776742 >5k 0.0 0.0 >10k+ 2.3504790709854298E-4 0.6534788436627266 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14465 0.6461991517435538 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3284 0.14670708706020263 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.934658164445957E-5 0.0 0.0 0.08246689485783619 0.0 2 8.934658164445957E-5 0.0 0.0 0.2556205700847988 0.0 3 8.934658164445957E-5 0.0 0.0 0.38897034318915474 0.0 4 8.934658164445957E-5 0.0 0.0 0.7380474376740583 0.0 5 8.934658164445957E-5 0.0 0.0 1.1453785033911494 0.0 6 8.934658164445957E-5 0.0 0.0 1.775539943729523 0.0 7 8.934658164445957E-5 0.0 0.0 2.024414846900165 0.0 8 8.934658164445957E-5 0.0 0.0 2.730699574799618 0.0 9 8.934658164445957E-5 0.0 0.0 2.9557636139620116 0.0 10 8.934658164445957E-5 0.0 0.0 3.426932812264069 0.0 11 8.934658164445957E-5 0.0 0.0 4.017290350479835 0.0 12 8.934658164445957E-5 0.0 0.0 4.488906281690116 0.0 13 8.934658164445957E-5 0.0 0.0 4.701506472713107 0.0 14 8.934658164445957E-5 0.0 0.0 4.791299787265789 0.0 15 8.934658164445957E-5 0.0 0.0 4.9213437368493 0.0 16 8.934658164445957E-5 0.0 0.0 5.182637814868522 0.0 17 8.934658164445957E-5 0.0 0.0 5.490749501669441 0.0 18 8.934658164445957E-5 0.0 0.0 5.851843711385524 0.0 19 8.934658164445957E-5 0.0 0.0 6.04751272518689 0.0 20 8.934658164445957E-5 0.0 0.0 6.257700558505482 0.0 21 8.934658164445957E-5 0.0 0.0 6.541509975099108 0.0 22 8.934658164445957E-5 0.0 0.0 6.837515200087203 0.0 23 8.934658164445957E-5 0.0 0.0 7.162379370946457 0.0 24 8.934658164445957E-5 0.0 0.0 7.392759531716696 0.0 25 1.3401987246668937E-4 0.0 0.0 7.599775561386909 0.0 26 1.3401987246668937E-4 0.0 0.0 7.793836336718675 0.0 27 1.3401987246668937E-4 0.0 0.0 7.995000165291176 0.0 28 1.3401987246668937E-4 0.0 0.0 8.207779049477457 0.0 29 1.3401987246668937E-4 0.0 0.0 8.444190104508696 0.0 30 1.3401987246668937E-4 0.0 0.0 8.70070414040994 0.0 31 1.7869316328891915E-4 0.0 0.0 8.944441615136025 0.0 32 1.7869316328891915E-4 0.0 0.0 9.167986762410463 0.0 33 1.7869316328891915E-4 0.0 0.0 9.39711607103768 0.0 34 1.7869316328891915E-4 0.0 0.0 9.629461856604097 0.0 35 1.7869316328891915E-4 0.0 0.0 9.888879656408786 0.0 36 1.7869316328891915E-4 0.0 0.0 10.123950512715359 0.0 37 1.7869316328891915E-4 0.0 0.0 10.38001781570838 0.0 38 1.7869316328891915E-4 0.0 0.0 10.636219138573868 0.0 39 1.7869316328891915E-4 0.0 0.0 10.91556122608527 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAAGCG 40 6.8193913E-9 45.000004 1 CCCGTAC 20 7.03472E-4 45.000004 30 ATGCGTA 20 7.03472E-4 45.000004 12 GCGTAAT 20 7.03472E-4 45.000004 20 TCGATAT 35 1.2126111E-7 45.0 13 GGTCGTA 50 2.1827873E-11 44.999996 27 TCCGATC 25 3.8919956E-5 44.999996 14 ACCTACG 25 3.8919956E-5 44.999996 1 TTCGATC 25 3.8919956E-5 44.999996 15 GCGTATT 30 2.1664273E-6 44.999996 14 GCCCGTA 25 3.8919956E-5 44.999996 29 CGGTCTA 345 0.0 43.04348 31 TAATGCG 80 0.0 42.187504 1 TAGGGCG 700 0.0 42.107143 5 TATTGCG 155 0.0 42.09677 1 GCGTAAG 225 0.0 42.0 1 CGTTTTT 8025 0.0 41.27103 1 CTATACG 60 3.6379788E-12 41.249996 1 AATGCGG 280 0.0 40.98214 2 ATCGAAC 50 1.0822987E-9 40.499996 35 >>END_MODULE