SRR1547476_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547476_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3148655
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52313	1.6614395670532338	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT	4409	0.14002804372025515	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT	4223	0.13412075949889715	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	3502	0.11122209324298789	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	3385	0.10750622091019817	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTACG	55	1.8189894E-12	44.999996	1
CGTTTTT	18105	0.0	43.334713	1
GCGATAT	245	0.0	42.2449	9
ATACCGG	50	1.0822987E-9	40.5	2
TAGGGCG	1210	0.0	40.35124	5
AGGGCGA	3050	0.0	40.204918	6
TAATGCG	140	0.0	40.17857	1
ATTCGGC	45	1.9301297E-8	40.0	17
TATACGA	45	1.9301297E-8	40.0	26
CGACGGT	575	0.0	39.913044	28
CGGTCTA	575	0.0	39.913044	31
CGTAAGG	645	0.0	39.76744	2
TATAGCG	125	0.0	39.6	1
GGGCGAT	5715	0.0	39.52756	7
CGGCATA	40	3.460773E-7	39.375004	25
ATTACGT	40	3.460773E-7	39.375004	12
TCGGAAC	40	3.460773E-7	39.375004	40
CGTACCG	40	3.460773E-7	39.375004	45
ACGTACC	40	3.460773E-7	39.375004	16
CGAGGGA	2085	0.0	39.06475	4