##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547474_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3430777 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26110674054303 31.0 31.0 33.0 30.0 34.0 2 31.67083753913472 31.0 31.0 34.0 30.0 34.0 3 31.836288397642868 31.0 31.0 34.0 30.0 34.0 4 35.59010801343253 37.0 35.0 37.0 33.0 37.0 5 35.46029310561427 37.0 35.0 37.0 33.0 37.0 6 35.508925820593994 37.0 35.0 37.0 33.0 37.0 7 35.905547926898194 37.0 35.0 37.0 35.0 37.0 8 35.940152915797206 37.0 35.0 37.0 35.0 37.0 9 37.69311091918828 39.0 37.0 39.0 35.0 39.0 10 36.97203548933667 39.0 37.0 39.0 32.0 39.0 11 36.79768926980681 39.0 37.0 39.0 32.0 39.0 12 36.432656800485724 39.0 35.0 39.0 32.0 39.0 13 36.31535217823834 39.0 35.0 39.0 32.0 39.0 14 37.37856176603726 39.0 36.0 41.0 32.0 41.0 15 37.48965671624824 39.0 36.0 41.0 32.0 41.0 16 37.52185204692698 39.0 36.0 41.0 32.0 41.0 17 37.453676237190585 39.0 36.0 41.0 32.0 41.0 18 37.35449753802127 39.0 36.0 41.0 32.0 41.0 19 37.30725751047066 39.0 36.0 41.0 32.0 41.0 20 37.20174846689248 39.0 35.0 41.0 32.0 41.0 21 37.15246400450977 39.0 35.0 41.0 31.0 41.0 22 37.08614462554692 39.0 35.0 41.0 31.0 41.0 23 37.001100916789404 39.0 35.0 41.0 31.0 41.0 24 36.92324712448521 39.0 35.0 41.0 31.0 41.0 25 36.80558893801608 39.0 35.0 41.0 31.0 41.0 26 36.68459827030436 38.0 35.0 40.0 31.0 41.0 27 36.59728714515691 38.0 35.0 40.0 30.0 41.0 28 36.50843963335419 38.0 35.0 40.0 30.0 41.0 29 36.55502733054349 38.0 35.0 40.0 30.0 41.0 30 36.49518578444475 38.0 35.0 40.0 30.0 41.0 31 36.40036877943393 38.0 35.0 40.0 30.0 41.0 32 36.38372677676223 39.0 35.0 41.0 30.0 41.0 33 36.304304826574274 39.0 35.0 41.0 30.0 41.0 34 36.18048068994283 39.0 35.0 41.0 30.0 41.0 35 36.08900228723697 39.0 35.0 41.0 29.0 41.0 36 36.03552897783796 39.0 35.0 41.0 29.0 41.0 37 35.989583117760205 38.0 35.0 41.0 29.0 41.0 38 35.87571678369069 38.0 35.0 41.0 28.0 41.0 39 35.79955940010091 38.0 35.0 41.0 28.0 41.0 40 35.69108455606412 38.0 35.0 40.0 27.0 41.0 41 35.59271587748198 38.0 34.0 40.0 27.0 41.0 42 35.56324850026685 38.0 34.0 40.0 27.0 41.0 43 35.54615324750049 38.0 34.0 40.0 27.0 41.0 44 35.43211290037213 38.0 34.0 40.0 27.0 41.0 45 35.306561166756104 38.0 34.0 40.0 26.0 41.0 46 35.2690655790219 38.0 34.0 40.0 26.0 41.0 47 35.225339041272576 38.0 34.0 40.0 26.0 41.0 48 35.14706143826894 38.0 34.0 40.0 26.0 41.0 49 35.055267946590526 38.0 34.0 40.0 26.0 41.0 50 34.96333017272764 37.0 34.0 40.0 26.0 41.0 51 34.397269481519785 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 1.0 12 3.0 13 16.0 14 24.0 15 110.0 16 250.0 17 577.0 18 1356.0 19 2431.0 20 4270.0 21 7069.0 22 10830.0 23 16085.0 24 23517.0 25 33212.0 26 44463.0 27 53801.0 28 61710.0 29 71799.0 30 86045.0 31 104028.0 32 127986.0 33 160041.0 34 232276.0 35 297561.0 36 274940.0 37 356371.0 38 533196.0 39 926407.0 40 399.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.19475442443505 24.63197112490844 29.351630840477245 12.821643610179267 2 29.906665457999747 25.740728703730966 30.666231002481364 13.686374835787928 3 28.766661313166086 25.703186187851905 31.819468301204072 13.710684197777937 4 25.234108774776093 28.59212359182774 31.369307885648062 14.804459747748105 5 22.765688355728166 32.89939859104803 29.96335815472705 14.371554898496756 6 22.089806478240934 41.51517280196293 26.24259752236884 10.152423197427288 7 91.23017905273355 2.5375301280147324 5.093889809801103 1.1384010094506287 8 91.88032332034405 2.0121972369524457 4.8058792512599915 1.3016001914435127 9 86.27141898176419 5.6141509634697915 6.12144129449393 1.9929887602720902 10 29.19633074373531 45.47200240645195 12.98437642551527 12.34729042429747 11 31.72843935936378 24.40330572345565 26.291536873425464 17.5767180437551 12 31.73770839666933 22.412677944384026 26.42101191654252 19.428601742404126 13 26.387200333918525 25.36990891567712 28.196615518875166 20.046275231529183 14 21.350731918746103 28.259866496714885 29.12028383074738 21.269117753791633 15 20.48588410147322 26.515159685400715 33.15715361272388 19.841802600402183 16 24.749903593267646 25.453942357664168 31.037400565527868 18.758753483540318 17 24.638558553936907 25.35664661387202 27.434106034871984 22.57068879731909 18 24.53791079979841 25.52378076453235 30.123584249282302 19.814724186386933 19 25.396287779707045 26.66958534466099 27.160436251030013 20.773690624601947 20 26.602049623161168 26.66107415317288 27.627415014149854 19.109461209516095 21 25.94321927656621 26.21589803126231 29.010629370547836 18.830253321623644 22 25.52351843328785 23.64773344347359 29.121799522382247 21.706948600856308 23 22.800665854994364 26.549321043017372 29.299805845731157 21.35020725625711 24 22.333832831454796 26.21927918952471 31.251521156869128 20.195366822151367 25 22.522536439995953 28.160384659218597 29.07166510676736 20.24541379401809 26 22.325671414959352 28.648262478149995 27.389742906636016 21.636323200254637 27 20.886172432658842 28.305978499914158 29.246377715602033 21.561471351824967 28 19.262808395882335 28.193875614765986 30.827827049091212 21.71548894026047 29 21.56934128915986 26.19182185260074 30.213447274480387 22.025389583759015 30 22.28847867407296 27.460105975993194 29.917537630688322 20.333877719245525 31 23.659159426567218 27.390180125376844 28.443410924114275 20.507249523941663 32 24.663101099255357 26.63918406821545 28.410998441460926 20.286716391068264 33 24.037499376963297 27.045535165940542 27.747154653304484 21.169810803791677 34 21.577998220228245 27.394727200281455 29.276254329558583 21.75102024993172 35 21.67351594114103 27.85348625107374 28.628354451484313 21.84464335630092 36 23.941661028973904 28.466554369462077 27.50324489175484 20.08853970980918 37 22.097414084331334 29.745623221794947 27.790876527387237 20.366086166486483 38 22.320774565062084 28.727428218155833 28.25724318426992 20.69455403251217 39 21.835316023163266 28.097658343867877 27.839640990947533 22.227384642021324 40 23.223718708619067 27.034808732832243 28.415195741372873 21.326276817175817 41 20.945634181411382 26.863564726008132 28.824170151542933 23.366630941037556 42 22.071093516133516 26.596598962858852 28.10535339370644 23.22695412730119 43 21.65637696650059 27.043174184740078 28.55906985502118 22.741378993738152 44 21.721610002632058 27.280525665177308 28.2675906944695 22.730273637721137 45 21.303687182233062 28.786015529426717 26.767172567613688 23.14312472072653 46 21.53611266485697 28.466088002805197 28.20728365615136 21.790515676186473 47 21.316395673633114 27.9020758271377 28.976584604595402 21.804943894633784 48 21.379005397319617 27.815156741461188 29.447061117641866 21.35877674357733 49 21.750495587442728 27.042241451426307 29.438870553230363 21.7683924079006 50 21.296662534463767 28.016364805990012 29.007947762270764 21.679024897275458 51 20.92193692565853 28.43944680753077 27.971447867349 22.667168399461694 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1421.0 1 3019.5 2 4618.0 3 16687.5 4 28757.0 5 20126.0 6 11495.0 7 11371.5 8 11248.0 9 11954.0 10 12660.0 11 12998.0 12 13336.0 13 13261.0 14 13186.0 15 12978.5 16 12771.0 17 12108.5 18 11446.0 19 11511.5 20 11577.0 21 12083.5 22 12590.0 23 14675.5 24 16761.0 25 19276.5 26 27989.5 27 34187.0 28 43356.5 29 52526.0 30 58820.0 31 65114.0 32 75242.5 33 85371.0 34 100036.5 35 114702.0 36 128269.5 37 141837.0 38 147840.0 39 153843.0 40 171390.5 41 188938.0 42 205212.5 43 221487.0 44 232955.0 45 244423.0 46 259748.5 47 275074.0 48 275770.5 49 276467.0 50 271940.0 51 267413.0 52 251243.0 53 235073.0 54 219572.5 55 204072.0 56 192081.5 57 180091.0 58 163049.0 59 146007.0 60 131641.0 61 117275.0 62 102865.5 63 88456.0 64 73777.5 65 59099.0 66 48155.0 67 37211.0 68 30808.5 69 24406.0 70 19129.0 71 13852.0 72 10959.0 73 8066.0 74 6846.5 75 4482.5 76 3338.0 77 2389.0 78 1440.0 79 1137.5 80 835.0 81 658.0 82 481.0 83 371.5 84 262.0 85 160.5 86 59.0 87 62.0 88 65.0 89 37.5 90 10.0 91 7.5 92 5.0 93 3.0 94 1.0 95 3.0 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3430777.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.203036629668873 #Duplication Level Percentage of deduplicated Percentage of total 1 78.21539832560744 12.673269640739587 2 7.3935959318780515 2.3959741141838165 3 2.439809105417825 1.18596948913454 4 1.2513481246647937 0.8110255800164442 5 0.8244263275876011 0.6679104992182646 6 0.5398663523320557 0.5248484569177212 7 0.44468282193371733 0.504364843666358 8 0.36065608358139595 0.46749789863858215 9 0.29159621508649686 0.42522697387073805 >10 4.6104012144198165 19.02494065277642 >50 2.145837176755206 25.033280452454438 >100 1.4756268546435374 34.94904830267123 >500 0.006207725598211753 0.7145901902731421 >1k 3.6516032930657366E-4 0.10647112791525723 >5k 0.0 0.0 >10k+ 1.8258016465328683E-4 0.5155817775235073 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17428 0.5079898810094623 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.829583211033536E-5 0.0 0.0 0.03101338268269841 0.0 2 5.829583211033536E-5 0.0 0.0 0.0844998086439311 0.0 3 5.829583211033536E-5 0.0 0.0 0.12807594314640677 0.0 4 5.829583211033536E-5 0.0 0.0 0.22397258696790845 0.0 5 5.829583211033536E-5 0.0 0.0 0.37898120454929013 0.0 6 5.829583211033536E-5 0.0 0.0 0.6087833747282321 0.0 7 5.829583211033536E-5 0.0 0.0 0.7164849245520767 0.0 8 5.829583211033536E-5 0.0 0.0 0.9914663646165286 0.0 9 5.829583211033536E-5 0.0 0.0 1.0963988624151322 0.0 10 5.829583211033536E-5 0.0 0.0 1.3041943559724225 0.0 11 5.829583211033536E-5 0.0 0.0 1.5410211739206598 0.0 12 5.829583211033536E-5 0.0 0.0 1.7447068113141717 0.0 13 5.829583211033536E-5 0.0 0.0 1.832208855311785 0.0 14 5.829583211033536E-5 0.0 0.0 1.878087675182619 0.0 15 5.829583211033536E-5 0.0 0.0 1.9373162406067197 0.0 16 5.829583211033536E-5 0.0 0.0 2.0415491884199994 0.0 17 5.829583211033536E-5 0.0 0.0 2.1721027044310954 0.0 18 5.829583211033536E-5 0.0 0.0 2.320990259640892 0.0 19 5.829583211033536E-5 0.0 0.0 2.4089003744632778 0.0 20 5.829583211033536E-5 0.0 0.0 2.5116176306416884 0.0 21 5.829583211033536E-5 0.0 0.0 2.6416173362477364 0.0 22 5.829583211033536E-5 0.0 0.0 2.8002985912520693 0.0 23 5.829583211033536E-5 0.0 0.0 2.9497982526990243 0.0 24 5.829583211033536E-5 0.0 0.0 3.0685760106238322 0.0 25 5.829583211033536E-5 0.0 0.0 3.1823111790710965 0.0 26 5.829583211033536E-5 0.0 0.0 3.2914409767816446 0.0 27 5.829583211033536E-5 0.0 0.0 3.4138330762972937 0.0 28 5.829583211033536E-5 0.0 0.0 3.5377991632799217 0.0 29 8.744374816550303E-5 0.0 0.0 3.682343678997498 0.0 30 8.744374816550303E-5 0.0 0.0 3.842074258979817 0.0 31 8.744374816550303E-5 0.0 0.0 3.985627745551518 0.0 32 8.744374816550303E-5 0.0 0.0 4.115977226150227 0.0 33 8.744374816550303E-5 0.0 0.0 4.259384973141652 0.0 34 8.744374816550303E-5 0.0 0.0 4.412411532431283 0.0 35 8.744374816550303E-5 0.0 0.0 4.576601743570043 0.0 36 8.744374816550303E-5 0.0 0.0 4.729628302859673 0.0 37 8.744374816550303E-5 0.0 0.0 4.894022549410819 0.0 38 8.744374816550303E-5 0.0 0.0 5.083338264189132 0.0 39 8.744374816550303E-5 0.0 0.0 5.401487767931288 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGACG 130 0.0 41.53846 1 CGTTTTT 9815 0.0 41.35507 1 TACGGGA 1575 0.0 40.0 4 GGCGATA 1050 0.0 39.42857 8 TAAGGGA 6690 0.0 39.41704 4 CGACGGT 850 0.0 39.17647 28 CACGACG 845 0.0 39.14201 26 TAGGGAC 4915 0.0 38.728382 5 GTATACG 105 0.0 38.57143 1 TCACGAC 865 0.0 38.23699 25 TTAGGGA 6135 0.0 38.21516 4 GGGCGAT 5480 0.0 38.184307 7 TATGGGA 6100 0.0 38.02869 4 GACCGAT 1860 0.0 37.862904 9 TAGGGAG 6170 0.0 37.597244 5 ATAGGGA 6920 0.0 37.424133 4 AAGGGAC 5560 0.0 37.108814 5 CGTAAGG 510 0.0 37.058823 2 AAGGGAT 6730 0.0 36.541603 5 ATGGGAC 3815 0.0 36.50721 5 >>END_MODULE