SRR1547473_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547473_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1826486
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20471	1.1207860339471531	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4819	0.2638399637336393	No Hit
CTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGCT	3455	0.18916104476026643	TruSeq Adapter, Index 16 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	3202	0.17530930978939888	TruSeq Adapter, Index 13 (95% over 23bp)
GAGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT	2622	0.1435543442435365	TruSeq Adapter, Index 13 (95% over 21bp)
AAGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT	2421	0.13254960618367728	No Hit
CCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	2347	0.12849811057955002	TruSeq Adapter, Index 13 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2120	0.11606987406418663	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTT	1948	0.10665288428162055	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGA	25	3.8917125E-5	45.0	28
CTATGCG	90	0.0	45.0	1
AGCGTAA	20	7.034381E-4	45.0	1
TCGCAAG	20	7.034381E-4	45.0	1
TAGCGAG	100	0.0	45.0	1
CTAAGCG	25	3.8917125E-5	45.0	1
CGCGACG	25	3.8917125E-5	45.0	36
ATGTCGA	25	3.8917125E-5	45.0	28
ACGATTT	20	7.034381E-4	45.0	45
CACTCGA	20	7.034381E-4	45.0	39
TATTACG	20	7.034381E-4	45.0	1
CGTCGTG	20	7.034381E-4	45.0	34
TCGGTTA	45	3.8562575E-10	45.0	1
AGTCGGT	40	6.8193913E-9	45.0	32
CTATCCG	30	2.1662072E-6	44.999996	1
GCGTAAT	30	2.1662072E-6	44.999996	9
GACGGTC	1140	0.0	44.605263	29
TCACGAC	1170	0.0	44.230766	25
CGGTCTA	1155	0.0	44.22078	31
CGACGGT	1150	0.0	44.217392	28