##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547471_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 5122889 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.260751892145233 31.0 31.0 33.0 30.0 34.0 2 31.669433985393788 31.0 31.0 34.0 30.0 34.0 3 31.800934199433172 31.0 31.0 34.0 30.0 34.0 4 35.56059696003564 37.0 35.0 37.0 33.0 37.0 5 35.43646036445451 37.0 35.0 37.0 33.0 37.0 6 35.48105453778132 37.0 35.0 37.0 33.0 37.0 7 35.91643328598375 37.0 35.0 37.0 35.0 37.0 8 35.954280680295824 37.0 35.0 37.0 35.0 37.0 9 37.67043381185889 39.0 37.0 39.0 35.0 39.0 10 36.95023179303709 39.0 37.0 39.0 32.0 39.0 11 36.790657576223104 39.0 37.0 39.0 32.0 39.0 12 36.44285831685988 39.0 35.0 39.0 32.0 39.0 13 36.34854180912372 39.0 35.0 39.0 32.0 39.0 14 37.40612787042624 39.0 36.0 41.0 32.0 41.0 15 37.51078444213802 39.0 36.0 41.0 32.0 41.0 16 37.54146869081099 40.0 36.0 41.0 32.0 41.0 17 37.46796055897366 39.0 36.0 41.0 32.0 41.0 18 37.36421714388112 39.0 36.0 41.0 32.0 41.0 19 37.30421935747583 39.0 36.0 41.0 32.0 41.0 20 37.1895104500605 39.0 35.0 41.0 32.0 41.0 21 37.12927803042385 39.0 35.0 41.0 31.0 41.0 22 37.06709866249298 39.0 35.0 41.0 31.0 41.0 23 36.95839691236722 39.0 35.0 41.0 31.0 41.0 24 36.89993575890479 39.0 35.0 41.0 31.0 41.0 25 36.79270934818225 39.0 35.0 41.0 31.0 41.0 26 36.64237230203504 38.0 35.0 40.0 31.0 41.0 27 36.54863730211605 38.0 35.0 40.0 30.0 41.0 28 36.44316439415338 38.0 35.0 40.0 30.0 41.0 29 36.47581784418909 38.0 35.0 40.0 30.0 41.0 30 36.41938699042669 38.0 35.0 40.0 30.0 41.0 31 36.31896377219963 38.0 35.0 40.0 30.0 41.0 32 36.25572933553704 38.0 35.0 41.0 30.0 41.0 33 36.159783083334425 38.0 35.0 41.0 30.0 41.0 34 36.01648737655647 38.0 35.0 41.0 29.0 41.0 35 35.89760914202904 38.0 35.0 41.0 28.0 41.0 36 35.86180005071357 38.0 35.0 41.0 28.0 41.0 37 35.81433815958144 38.0 35.0 41.0 28.0 41.0 38 35.7069040535526 38.0 35.0 41.0 27.0 41.0 39 35.626044210600696 38.0 35.0 40.0 27.0 41.0 40 35.54350777461702 38.0 34.0 40.0 26.0 41.0 41 35.43569302399486 38.0 34.0 40.0 26.0 41.0 42 35.39757488401564 38.0 34.0 40.0 26.0 41.0 43 35.385676714838056 38.0 34.0 40.0 26.0 41.0 44 35.26713910842105 38.0 34.0 40.0 26.0 41.0 45 35.13877540583058 38.0 34.0 40.0 25.0 41.0 46 35.12711811635973 38.0 34.0 40.0 26.0 41.0 47 35.08045909251596 38.0 34.0 40.0 26.0 41.0 48 34.98671843172866 38.0 34.0 40.0 25.0 41.0 49 34.902871407129844 38.0 34.0 40.0 25.0 41.0 50 34.80058459201439 37.0 34.0 40.0 24.0 41.0 51 34.26649611186188 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 1.0 11 2.0 12 7.0 13 13.0 14 26.0 15 103.0 16 346.0 17 950.0 18 2016.0 19 3885.0 20 6821.0 21 11040.0 22 16988.0 23 25177.0 24 37476.0 25 55014.0 26 72972.0 27 85969.0 28 96031.0 29 109249.0 30 129588.0 31 156940.0 32 190805.0 33 240176.0 34 342614.0 35 436205.0 36 417987.0 37 534032.0 38 789573.0 39 1360237.0 40 643.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.89136266665157 24.69887596627606 28.827230103951113 13.58253126312126 2 31.066220642297736 25.57861394225016 29.434855996294278 13.920309419157823 3 28.724651266111756 25.75718505710352 31.84140823664147 13.676755440143248 4 25.121781869566178 28.077594497948326 31.589304394453986 15.211319238031509 5 22.84742066439464 32.547533237593086 30.618484999382183 13.98656109863009 6 21.93178497523565 40.77205264451367 27.161568404078245 10.134593976172429 7 89.73116536391868 2.645069998588687 6.373552110928032 1.2502125265646007 8 89.93226283060203 2.27719163932695 6.161191468329687 1.6293540617413338 9 83.33450129409403 6.274935880906263 7.925488918459876 2.465073906539845 10 28.94345358644312 45.202111542920406 14.492096159022772 11.3623387116137 11 31.686847011520257 24.22935574048159 26.961564070585954 17.1222331774122 12 29.225442909264675 22.62079072960589 28.750417977043814 19.40334838408562 13 25.32795459749372 25.608792226417552 30.468140145140758 18.595113030947967 14 21.012420921085738 28.50746912533143 30.88967963194205 19.590430321640778 15 19.86176159584953 26.800658768909496 34.4821642631726 18.855415372068375 16 24.300058033660303 26.217491731716226 31.66697541172569 17.815474822897784 17 23.272532354302424 25.838194034655054 29.104573610710677 21.784700000331846 18 23.76077248599374 24.938935823126364 31.241141473102385 20.059150217777507 19 24.369511031763523 26.929121439094228 28.916086216195584 19.78528131294666 20 25.979149655594725 26.745357941583354 28.832207764017532 18.443284638804393 21 24.991542857945976 26.120105276534396 30.64735542776742 18.240996437752212 22 24.952307184481256 23.485029638549655 30.181056040839454 21.38160713612963 23 21.242447376860987 27.437408852700106 30.58604236789046 20.734101402548443 24 20.780696204817243 26.681956216502055 32.421530117088224 20.11581746159247 25 21.85762760036378 27.83257650126715 30.05967921616104 20.250116682208027 26 21.295015371209487 29.09578950471111 28.69954824318856 20.909646880890843 27 20.648251406579373 28.422165695957887 30.212756903380107 20.716825994082637 28 19.650845450682223 27.782331414949653 31.271358797740884 21.295464336627244 29 20.659358420609934 26.610492634136712 31.175202117398992 21.55494682785436 30 21.895770140637442 26.96443354521248 30.118181362118136 21.02161495203195 31 22.918044876631136 27.42378372828301 29.032641542692023 20.625529852393836 32 23.79475721609428 26.556441101886065 29.079509628258588 20.56929205376107 33 23.255725431489928 27.385016540471597 28.611765743899586 20.74749228413889 34 20.922549756592424 27.439165673900018 30.41264411545907 21.225640454048484 35 20.656723188810062 28.099925647422776 29.941015704224704 21.30233545954246 36 23.2835027266841 27.92844037807573 27.789729584224837 20.998327311015327 37 21.115487764813956 29.4828172150519 28.561052171928768 20.84064284820538 38 21.794401557402473 28.94724051214071 28.38501868769751 20.873339242759307 39 21.147012945234614 28.12914744004799 28.69394593558439 22.029893679133007 40 23.51534456436593 26.604265678994803 28.85067390685217 21.029715849787102 41 20.546570499575534 26.802435110344963 28.998481130471497 23.652513259608007 42 21.61270720486038 26.809013429726857 28.950207587945005 22.628071777467753 43 21.179240854135234 26.894629182869274 29.34262288329886 22.583507079696634 44 21.43884046677568 27.896231989410662 29.12536266157631 21.539564882237347 45 20.53928945171367 28.321343679318446 28.056864007789358 23.08250286117853 46 21.248381528469583 28.362336173983078 28.19227588183152 22.19700641571582 47 21.258746773549067 27.69341674199851 29.253844851996597 21.79399163245583 48 21.008790157272585 28.00339808260534 29.848645949580405 21.13916581054167 49 22.10319216364048 26.70606370741197 29.684344126917452 21.506400002030105 50 20.40543919651587 28.58615519485197 29.148474620472943 21.85993098815922 51 20.327358254297526 28.432413819624042 28.488710178963473 22.751517747114956 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2113.0 1 3909.0 2 5705.0 3 31507.0 4 57309.0 5 39267.5 6 21226.0 7 21075.0 8 20924.0 9 22098.5 10 23273.0 11 23826.5 12 24380.0 13 24557.5 14 24735.0 15 23822.0 16 22909.0 17 22374.5 18 21840.0 19 21502.0 20 21164.0 21 23365.0 22 25566.0 23 28316.0 24 31066.0 25 37849.0 26 50428.0 27 56224.0 28 69031.5 29 81839.0 30 92861.5 31 103884.0 32 120785.5 33 137687.0 34 154559.5 35 171432.0 36 186955.5 37 202479.0 38 218770.0 39 235061.0 40 262165.5 41 289270.0 42 312638.5 43 336007.0 44 352931.0 45 369855.0 46 387666.5 47 405478.0 48 415646.5 49 425815.0 50 415036.0 51 404257.0 52 379076.0 53 353895.0 54 325561.5 55 297228.0 56 273355.5 57 249483.0 58 225223.0 59 200963.0 60 175130.5 61 149298.0 62 126420.5 63 103543.0 64 89710.5 65 75878.0 66 61571.5 67 47265.0 68 38627.5 69 29990.0 70 24840.0 71 19690.0 72 16062.5 73 12435.0 74 10494.5 75 6483.5 76 4413.0 77 3444.0 78 2475.0 79 1781.0 80 1087.0 81 683.5 82 280.0 83 198.5 84 117.0 85 101.5 86 86.0 87 73.0 88 60.0 89 37.0 90 14.0 91 9.0 92 4.0 93 2.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 5122889.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.526400192311346 #Duplication Level Percentage of deduplicated Percentage of total 1 77.2439076576237 13.538076380254557 2 8.899156282646304 3.119403487671618 3 3.086839907308312 1.623035746352482 4 1.5512230674956062 1.0874942507389116 5 0.9963951805524889 0.873161034202662 6 0.6700004021919383 0.7045617106695281 7 0.4871846377488353 0.5977015050112624 8 0.3641214999299759 0.5105391301117941 9 0.301825115261073 0.4760916982340456 >10 3.3384233917869035 13.970030022750196 >50 1.5087738546807794 19.347671019327862 >100 1.5437734334937214 42.12313017586275 >500 0.006338268644673572 0.7389073008041228 >1k 0.0019241172671315148 0.5536498366514544 >5k 0.0 0.0 >10k+ 1.1318336865479498E-4 0.7365467013568077 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37130 0.7247863461417962 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.856070666375945E-5 0.0 0.0 0.04161714220237839 0.0 2 5.856070666375945E-5 0.0 0.0 0.12049841407846237 0.0 3 5.856070666375945E-5 0.0 0.0 0.18872163734174213 0.0 4 5.856070666375945E-5 0.0 0.0 0.3167353421087203 0.0 5 5.856070666375945E-5 0.0 0.0 0.5485381393194348 0.0 6 5.856070666375945E-5 0.0 0.0 0.8960373726621834 0.0 7 5.856070666375945E-5 0.0 0.0 1.0777122049687198 0.0 8 5.856070666375945E-5 0.0 0.0 1.525116003879842 0.0 9 5.856070666375945E-5 0.0 0.0 1.7068298766574876 0.0 10 5.856070666375945E-5 0.0 0.0 2.049253848756044 0.0 11 7.808094221834593E-5 0.0 0.0 2.396245555974373 0.0 12 7.808094221834593E-5 0.0 0.0 2.699355773665992 0.0 13 7.808094221834593E-5 0.0 0.0 2.8537803571383256 0.0 14 7.808094221834593E-5 0.0 0.0 2.9284647783701736 0.0 15 7.808094221834593E-5 0.0 0.0 3.0200927640634023 0.0 16 7.808094221834593E-5 0.0 0.0 3.1896650503260955 0.0 17 7.808094221834593E-5 0.0 0.0 3.3978874029868695 0.0 18 9.760117777293242E-5 0.0 0.0 3.638415745490484 0.0 19 9.760117777293242E-5 0.0 0.0 3.7808158638611924 0.0 20 9.760117777293242E-5 0.0 0.0 3.9463669815996405 0.0 21 9.760117777293242E-5 0.0 0.0 4.155955750749236 0.0 22 9.760117777293242E-5 0.0 0.0 4.390862265413129 0.0 23 9.760117777293242E-5 0.0 0.0 4.654034081160064 0.0 24 9.760117777293242E-5 0.0 0.0 4.844141655226182 0.0 25 9.760117777293242E-5 0.0 0.0 5.022380926075111 0.0 26 9.760117777293242E-5 0.0 0.0 5.189161818653498 0.0 27 9.760117777293242E-5 0.0 0.0 5.374447894537633 0.0 28 9.760117777293242E-5 0.0 0.0 5.566761255221419 0.0 29 9.760117777293242E-5 0.0 0.0 5.7848218066017045 0.0 30 9.760117777293242E-5 0.0 0.0 6.050433651792963 0.0 31 1.171214133275189E-4 0.0 0.0 6.277746794826123 0.0 32 1.171214133275189E-4 0.0 0.0 6.492723148988784 0.0 33 1.171214133275189E-4 0.0 0.0 6.712735723924528 0.0 34 1.171214133275189E-4 0.0 0.0 6.948208325419505 0.0 35 1.171214133275189E-4 0.0 0.0 7.1974231727449105 0.0 36 1.171214133275189E-4 0.0 0.0 7.422432927982628 0.0 37 1.171214133275189E-4 0.0 0.0 7.664288646503955 0.0 38 1.171214133275189E-4 0.0 0.0 7.927148138482017 0.0 39 1.366416488821054E-4 0.0 0.0 8.33957167527932 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 610 0.0 42.418034 31 CGTTTTT 19380 0.0 42.202015 1 TAATGCG 215 0.0 40.81395 1 CGACGGT 670 0.0 39.96269 28 CTCACGA 655 0.0 39.50382 24 GGGCGAT 8760 0.0 38.70719 7 CGTTAGG 420 0.0 38.57143 2 CGATCGA 35 6.2525214E-6 38.571426 10 TACGGGA 2980 0.0 38.355705 4 CGAGGGA 4590 0.0 37.941177 4 CACGACC 1115 0.0 37.735424 27 TTAGGGA 9510 0.0 37.59464 4 AGGGCGA 4705 0.0 37.587673 6 TAAGGGA 9680 0.0 37.492252 4 ACGGGAC 1855 0.0 37.479782 5 ATAGGGA 10350 0.0 37.45652 4 TAGGGAC 7115 0.0 37.347153 5 GACCGAT 2835 0.0 36.984127 9 TAGGGAT 10345 0.0 36.82214 5 CGGGATC 1370 0.0 36.78832 6 >>END_MODULE