##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547469_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2747117 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.324643617290416 31.0 31.0 33.0 30.0 34.0 2 31.741245094402604 31.0 31.0 34.0 30.0 34.0 3 31.876141787918023 31.0 31.0 34.0 30.0 34.0 4 35.62398652842234 37.0 35.0 37.0 33.0 37.0 5 35.49175626666065 37.0 35.0 37.0 33.0 37.0 6 35.545385944610295 37.0 35.0 37.0 33.0 37.0 7 35.947253065668484 37.0 35.0 37.0 35.0 37.0 8 35.97728746172806 37.0 35.0 37.0 35.0 37.0 9 37.708538806319496 39.0 37.0 39.0 35.0 39.0 10 37.067660751253044 39.0 37.0 39.0 33.0 39.0 11 36.900187360057835 39.0 37.0 39.0 32.0 39.0 12 36.44813271513372 39.0 35.0 39.0 32.0 39.0 13 36.278862895173376 39.0 35.0 39.0 32.0 39.0 14 37.42570411089153 39.0 36.0 41.0 32.0 41.0 15 37.55493413640555 39.0 36.0 41.0 32.0 41.0 16 37.5917603800639 39.0 36.0 41.0 32.0 41.0 17 37.5144131101806 39.0 35.0 41.0 32.0 41.0 18 37.41008082291362 39.0 36.0 41.0 32.0 41.0 19 37.36001196891141 39.0 36.0 41.0 32.0 41.0 20 37.23861379038461 39.0 35.0 41.0 32.0 41.0 21 37.18698475529073 39.0 35.0 41.0 32.0 41.0 22 37.097329309235825 39.0 35.0 41.0 32.0 41.0 23 37.00449962633554 39.0 35.0 41.0 31.0 41.0 24 36.93015477680783 39.0 35.0 41.0 31.0 41.0 25 36.851626996593154 38.0 35.0 41.0 31.0 41.0 26 36.71567101073598 38.0 35.0 40.0 31.0 41.0 27 36.641326161208276 38.0 35.0 40.0 31.0 41.0 28 36.55727550009701 38.0 35.0 40.0 31.0 41.0 29 36.61033039364541 38.0 35.0 40.0 31.0 41.0 30 36.59108003044646 38.0 35.0 40.0 31.0 41.0 31 36.49784410347284 38.0 35.0 40.0 30.0 41.0 32 36.43244208382825 38.0 35.0 41.0 30.0 41.0 33 36.328477454727995 38.0 35.0 41.0 30.0 41.0 34 36.220303321627725 38.0 35.0 41.0 30.0 41.0 35 36.09810393951186 38.0 35.0 41.0 30.0 41.0 36 36.04090142502121 38.0 35.0 41.0 29.0 41.0 37 35.98057563620333 38.0 35.0 41.0 29.0 41.0 38 35.88698733981843 38.0 35.0 41.0 29.0 41.0 39 35.81482077392408 38.0 35.0 41.0 29.0 41.0 40 35.68401127436509 38.0 35.0 40.0 28.0 41.0 41 35.618910297595626 38.0 35.0 40.0 28.0 41.0 42 35.57580619973594 38.0 35.0 40.0 27.0 41.0 43 35.53302644190255 38.0 34.0 40.0 27.0 41.0 44 35.40182271086379 38.0 34.0 40.0 27.0 41.0 45 35.300934033752476 38.0 34.0 40.0 27.0 41.0 46 35.26382458410035 38.0 34.0 40.0 27.0 41.0 47 35.22639807478167 38.0 34.0 40.0 27.0 41.0 48 35.17222091377979 38.0 34.0 40.0 26.0 41.0 49 35.10249072027147 38.0 34.0 40.0 26.0 41.0 50 34.97999393546034 37.0 34.0 40.0 26.0 41.0 51 34.416625866317304 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 1.0 12 1.0 13 7.0 14 16.0 15 52.0 16 155.0 17 367.0 18 800.0 19 1674.0 20 2905.0 21 4725.0 22 7491.0 23 11591.0 24 17575.0 25 25714.0 26 34506.0 27 40738.0 28 46222.0 29 55221.0 30 66391.0 31 81379.0 32 101117.0 33 128909.0 34 196890.0 35 281284.0 36 216167.0 37 272524.0 38 408055.0 39 744168.0 40 469.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.264340033569738 25.34478873670106 30.47715113699198 12.913720092737222 2 29.183504015300404 26.967216904121667 30.476095484830097 13.373183595747834 3 27.610982713877856 26.35632191857864 32.44401312357646 13.58868224396704 4 25.561306635283465 28.650872896931585 31.35734662921164 14.430473838573313 5 22.99406978297612 32.85375176958244 29.918820348751073 14.23335809869037 6 21.592928149765736 41.683881683961765 26.602725693881986 10.120464472390509 7 89.46826800605872 3.0997951670787955 6.054055943012257 1.3778808838502328 8 88.84339472982039 3.052181614397931 5.583344284207771 2.521079371573908 9 82.23046197158695 7.271768912645511 7.766178142394373 2.731590973373176 10 30.369074196694207 45.250093097600136 12.955254545037578 11.425578160668074 11 33.300474643053064 24.061698136628326 26.494466744590785 16.143360475727828 12 32.6032709928263 22.408692458311748 26.54466482497833 18.44337172388362 13 23.30490474195311 30.995003125094417 27.17164940554043 18.52844272741205 14 18.39495733163167 32.659912191581206 28.418884233907765 20.526246242879353 15 17.11557971502488 28.177321897829614 36.3325624645765 18.374535922569006 16 20.580266512128897 25.79336810190465 35.12005495215529 18.506310433811155 17 20.035549996596433 26.03460282179463 27.857568498174633 26.07227868343431 18 21.016032444195133 26.230917722106483 32.07002104387982 20.683028789818565 19 24.626071623451057 28.13502300775686 27.113442929442026 20.125462439350052 20 25.899042523489168 26.70213900609257 28.011184088628188 19.387634381790072 21 23.17953694727964 28.915040749993537 28.737691186796923 19.1677311159299 22 23.43169220677532 25.757730740991374 27.201790094852168 23.608786957381138 23 19.338528355363096 29.67511030655047 28.219329573512887 22.76703176457355 24 19.603351440801394 26.20277913172246 34.23924062935797 19.954628798118172 25 19.43633998843151 29.72778370924864 30.061806613988413 20.77406968833144 26 19.6107046041359 33.131097073768615 26.924189978075198 20.334008344020294 27 18.893880384417557 32.372119571172256 28.210629543627007 20.523370500783184 28 17.427069906378215 29.584142211634962 32.972203222505634 20.016584659481193 29 18.42142143927616 26.770865602011128 32.278639752147434 22.529073206565283 30 20.022736563459073 29.569909108348863 30.125145743701488 20.282208584490576 31 23.352773107224774 28.682942881573663 28.140119259572856 19.824164751628707 32 23.834732921823132 28.031860310281655 28.425836977456733 19.707569790438484 33 23.503367348387417 28.11401916991522 27.43658169637478 20.946031785322578 34 20.3988035456808 28.230286514917275 28.363371490912108 23.007538448489818 35 20.243804686877187 27.49537060125215 30.76789230309448 21.492932408776184 36 24.265329798476003 28.14536111858359 27.14857066517371 20.4407384177667 37 20.668540873941662 31.549111304687788 28.331010291880542 19.451337529490008 38 20.430800726725508 30.565534704200804 27.612657196617402 21.39100737245629 39 20.478086663218203 30.1952556079701 27.88064723854135 21.446010490270346 40 23.095193979724925 27.77617407631346 28.178159139199387 20.950472804762228 41 18.408316791749314 27.079552854865664 29.40355288835532 25.108577465029704 42 20.971513044402553 27.391953091186146 27.810901392259595 23.825632472151714 43 21.018180150317587 27.109948356768204 29.362309650444445 22.50956184246976 44 20.200777760830718 27.41503183155286 29.48345483647038 22.90073557114604 45 19.291752044052004 30.81040960395935 26.5726942099663 23.325144142022346 46 20.733809298985083 30.542710776424887 27.362649643244175 21.360830281345862 47 20.450821716002633 27.75993887409965 29.189219097694057 22.600020312203668 48 20.708910468684078 25.677319167694712 31.486755023539224 22.127015340081986 49 20.72372600074915 26.054114185890153 30.998206483378755 22.223953329981942 50 19.298777591198334 28.47636267403245 29.810852613849352 22.41400712091986 51 18.819693518696145 28.182199738853498 28.922321109730674 24.075785632719686 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1954.0 1 3004.0 2 4054.0 3 13821.5 4 23589.0 5 16647.5 6 9706.0 7 10006.5 8 10307.0 9 11207.5 10 12108.0 11 12543.5 12 12979.0 13 12895.5 14 12812.0 15 12206.5 16 11601.0 17 11734.5 18 11868.0 19 11577.5 20 11287.0 21 12648.0 22 14009.0 23 14092.5 24 14176.0 25 17273.0 26 26098.0 27 31826.0 28 37801.0 29 43776.0 30 50084.5 31 56393.0 32 67369.5 33 78346.0 34 89128.0 35 99910.0 36 106221.0 37 112532.0 38 128094.5 39 143657.0 40 158507.5 41 173358.0 42 190239.0 43 207120.0 44 215802.0 45 224484.0 46 237453.0 47 250422.0 48 248536.0 49 246650.0 50 234671.0 51 222692.0 52 193022.5 53 163353.0 54 147162.5 55 130972.0 56 118045.0 57 105118.0 58 96552.0 59 87986.0 60 79536.5 61 71087.0 62 59399.0 63 47711.0 64 40692.0 65 33673.0 66 26637.5 67 19602.0 68 14746.0 69 9890.0 70 8109.5 71 6329.0 72 4861.0 73 3393.0 74 3025.5 75 2188.0 76 1718.0 77 1361.0 78 1004.0 79 616.0 80 228.0 81 217.0 82 206.0 83 141.0 84 76.0 85 89.0 86 102.0 87 54.5 88 7.0 89 7.0 90 7.0 91 5.5 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 2.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2747117.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.146065687462322 #Duplication Level Percentage of deduplicated Percentage of total 1 76.24041425839752 13.072231509138229 2 10.14097911790851 3.4775578818168604 3 3.636623807797814 1.8706137206727202 4 1.8515326061246506 1.2698599874836625 5 1.0460943731154544 0.896820141836115 6 0.6927411459187474 0.712667111539846 7 0.5089258889695316 0.6108253705625221 8 0.3569620609700929 0.4896395956260115 9 0.26628408656351005 0.41091519957694617 >10 2.512066118335029 9.88253624110578 >50 1.0663026485758935 13.423700871351294 >100 1.6664539845103477 51.0316969646889 >500 0.01160992282198326 1.3459340620581564 >1k 0.0027949814201070813 0.9559150985519448 >5k 0.0 0.0 >10k+ 2.149985707774678E-4 0.549086243991023 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14895 0.5422047914231538 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3329 0.12118158782461759 No Hit GAGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT 3238 0.11786902414422103 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06825337253564373 0.0 2 0.0 0.0 0.0 0.2743967584926306 0.0 3 0.0 0.0 0.0 0.4236077313052192 0.0 4 0.0 0.0 0.0 0.8524209198224902 0.0 5 0.0 0.0 0.0 1.36131806544825 0.0 6 3.6401798685676656E-5 0.0 0.0 2.0184433353220848 0.0 7 3.6401798685676656E-5 0.0 0.0 2.2841764657275245 0.0 8 3.6401798685676656E-5 0.0 0.0 3.0303405351865247 0.0 9 3.6401798685676656E-5 0.0 0.0 3.2629480287879984 0.0 10 3.6401798685676656E-5 0.0 0.0 3.7856414561156297 0.0 11 3.6401798685676656E-5 0.0 0.0 4.455325346536023 0.0 12 3.6401798685676656E-5 0.0 0.0 4.984207079640219 0.0 13 3.6401798685676656E-5 0.0 0.0 5.199523718865996 0.0 14 7.280359737135331E-5 0.0 0.0 5.28444911519968 0.0 15 7.280359737135331E-5 0.0 0.0 5.431075560305586 0.0 16 7.280359737135331E-5 0.0 0.0 5.744349439794519 0.0 17 7.280359737135331E-5 0.0 0.0 6.119251564458303 0.0 18 7.280359737135331E-5 0.0 0.0 6.565064392961785 0.0 19 7.280359737135331E-5 0.0 0.0 6.785477284003557 0.0 20 7.280359737135331E-5 0.0 0.0 7.026238780510623 0.0 21 7.280359737135331E-5 0.0 0.0 7.34267961648521 0.0 22 7.280359737135331E-5 0.0 0.0 7.672916734161668 0.0 23 7.280359737135331E-5 0.0 0.0 8.030964826033983 0.0 24 7.280359737135331E-5 0.0 0.0 8.301502993865933 0.0 25 7.280359737135331E-5 0.0 0.0 8.526611716938158 0.0 26 7.280359737135331E-5 0.0 0.0 8.737196122334797 0.0 27 7.280359737135331E-5 0.0 0.0 8.951020287814462 0.0 28 7.280359737135331E-5 0.0 0.0 9.174308920952402 0.0 29 7.280359737135331E-5 0.0 0.0 9.412704300544899 0.0 30 7.280359737135331E-5 0.0 0.0 9.700715331745972 0.0 31 7.280359737135331E-5 0.0 0.0 9.960624174361703 0.0 32 7.280359737135331E-5 0.0 0.0 10.203715385984653 0.0 33 7.280359737135331E-5 0.0 0.0 10.441710345791606 0.0 34 1.0920539605702997E-4 0.0 0.0 10.695758498818943 0.0 35 1.0920539605702997E-4 0.0 0.0 10.962219665198097 0.0 36 1.0920539605702997E-4 0.0 0.0 11.223766588754684 0.0 37 1.0920539605702997E-4 0.0 0.0 11.496852882494629 0.0 38 1.0920539605702997E-4 0.0 0.0 11.754250001001049 0.0 39 1.0920539605702997E-4 0.0 0.0 12.030175635038479 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATT 30 2.1666092E-6 45.000004 34 CGACTCG 30 2.1666092E-6 45.000004 14 CGAACTA 20 7.035001E-4 45.0 24 TAGCGAT 25 3.8922273E-5 45.0 1 TATATCG 20 7.035001E-4 45.0 41 TCGATCA 75 0.0 45.0 17 CCGTCGA 20 7.035001E-4 45.0 17 GTCGTAC 40 6.8212103E-9 45.0 44 GCGATCG 20 7.035001E-4 45.0 9 ACTCGAT 25 3.8922273E-5 45.0 10 CGTAAGT 25 3.8922273E-5 45.0 20 CGTCGCG 25 3.8922273E-5 45.0 29 ACCGTAA 25 3.8922273E-5 45.0 39 TTACCCG 100 0.0 45.0 1 TCGACGA 25 3.8922273E-5 45.0 26 TATCGTC 25 3.8922273E-5 45.0 26 CCCGATA 25 3.8922273E-5 45.0 13 TGCGTAG 160 0.0 43.59375 1 TAAACGG 110 0.0 42.954544 2 TATAGCG 220 0.0 41.93182 1 >>END_MODULE