SRR1547462_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547462_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2260194
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11648	0.5153539917369925	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2722	0.12043213989595583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	20	7.034736E-4	45.0	38
AACGCGT	25	3.8920065E-5	45.0	15
CGAATTA	35	1.2126293E-7	45.0	40
CGAATCG	25	3.8920065E-5	45.0	19
CGTACTC	20	7.034736E-4	45.0	38
CCGGTCG	20	7.034736E-4	45.0	18
CGACTTA	25	3.8920065E-5	45.0	28
ACGGGAT	1655	0.0	42.41692	5
CGGTCTA	605	0.0	41.652893	31
TATAGCG	60	3.6379788E-12	41.249996	1
CGTAAGG	405	0.0	41.11111	2
CGTTTTT	6190	0.0	41.110664	1
TAGTGCG	170	0.0	41.029415	1
CGCGAGG	165	0.0	40.90909	2
CGACGGT	620	0.0	40.64516	28
ACGTCGA	50	1.0822987E-9	40.5	10
TAATGCG	50	1.0822987E-9	40.5	1
CGTATGG	145	0.0	40.344826	2
TACGGGA	1620	0.0	40.277775	4
CGACGTA	45	1.9297659E-8	40.0	44