##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547462_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2260194 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.22664116443102 31.0 31.0 33.0 30.0 34.0 2 31.63634316346296 31.0 31.0 34.0 30.0 34.0 3 31.801231221744683 31.0 31.0 34.0 30.0 34.0 4 35.54012487423646 37.0 35.0 37.0 33.0 37.0 5 35.39863746209396 37.0 35.0 37.0 33.0 37.0 6 35.439933032297226 37.0 35.0 37.0 33.0 37.0 7 35.8807996127766 37.0 35.0 37.0 35.0 37.0 8 35.90482100209097 37.0 35.0 37.0 35.0 37.0 9 37.620347633875674 39.0 37.0 39.0 35.0 39.0 10 36.95094934328646 39.0 37.0 39.0 32.0 39.0 11 36.798403145924645 39.0 37.0 39.0 32.0 39.0 12 36.3575865611536 38.0 35.0 39.0 32.0 39.0 13 36.184582385405854 38.0 35.0 39.0 32.0 39.0 14 37.31558839639429 39.0 36.0 41.0 32.0 41.0 15 37.43928972468735 39.0 36.0 41.0 32.0 41.0 16 37.487099779930396 39.0 36.0 41.0 32.0 41.0 17 37.40492895742578 39.0 35.0 41.0 32.0 41.0 18 37.30790940954626 39.0 36.0 41.0 32.0 41.0 19 37.25814819435854 39.0 36.0 41.0 32.0 41.0 20 37.151713083036235 39.0 35.0 41.0 32.0 41.0 21 37.10283630520212 39.0 35.0 41.0 31.0 41.0 22 37.01245468309357 39.0 35.0 41.0 31.0 41.0 23 36.90927106257251 39.0 35.0 41.0 31.0 41.0 24 36.82957259421094 39.0 35.0 41.0 31.0 41.0 25 36.723790524176245 38.0 35.0 40.0 31.0 41.0 26 36.5869690831849 38.0 35.0 40.0 31.0 41.0 27 36.47927832743561 38.0 35.0 40.0 30.0 41.0 28 36.3810854289499 38.0 35.0 40.0 30.0 41.0 29 36.44408754292773 38.0 35.0 40.0 30.0 41.0 30 36.40254995810094 38.0 35.0 40.0 30.0 41.0 31 36.31321824586739 38.0 35.0 40.0 30.0 41.0 32 36.25774955601156 38.0 35.0 40.0 30.0 41.0 33 36.183990400824 38.0 35.0 41.0 30.0 41.0 34 36.09511041972503 38.0 35.0 41.0 30.0 41.0 35 35.995311464414115 38.0 35.0 41.0 29.0 41.0 36 35.95045248328241 38.0 35.0 41.0 29.0 41.0 37 35.881380536361036 38.0 35.0 41.0 29.0 41.0 38 35.79698114409648 38.0 35.0 41.0 28.0 41.0 39 35.71725480202142 38.0 35.0 40.0 27.0 41.0 40 35.58029797442166 38.0 34.0 40.0 27.0 41.0 41 35.478818189942984 38.0 34.0 40.0 27.0 41.0 42 35.42932332357311 38.0 34.0 40.0 27.0 41.0 43 35.39360116874923 38.0 34.0 40.0 27.0 41.0 44 35.261995209260796 38.0 34.0 40.0 26.0 41.0 45 35.14795632587291 38.0 34.0 40.0 26.0 41.0 46 35.07997853281621 38.0 34.0 40.0 26.0 41.0 47 35.038150264977254 38.0 34.0 40.0 26.0 41.0 48 34.972272291670535 38.0 34.0 40.0 26.0 41.0 49 34.89233446332483 37.0 34.0 40.0 26.0 41.0 50 34.79238286624953 37.0 34.0 40.0 25.0 41.0 51 34.19628049627598 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 0.0 11 0.0 12 1.0 13 6.0 14 17.0 15 36.0 16 143.0 17 356.0 18 863.0 19 1682.0 20 2921.0 21 4705.0 22 7207.0 23 10797.0 24 16006.0 25 22602.0 26 29712.0 27 36254.0 28 42092.0 29 49574.0 30 59122.0 31 70548.0 32 85613.0 33 106614.0 34 157784.0 35 217405.0 36 180057.0 37 226710.0 38 336976.0 39 594052.0 40 336.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.57370561996006 25.183944387074735 30.282135073360962 12.960214919604246 2 27.162004677474588 27.823850519026244 31.089278177006047 13.924866626493124 3 28.821508242212836 26.493079797574897 31.114629983089948 13.570781977122317 4 25.6581072244241 29.634004868608628 30.041492013517423 14.666395893449854 5 23.1692500732238 33.3026722484884 29.036091592137662 14.491986086150128 6 21.17888995369424 43.11961716560614 25.443125678592192 10.25836720210743 7 89.78472644383623 3.343208591828843 5.482670956563906 1.3893940077710145 8 88.92139347330362 3.416520882720687 5.114295498528002 2.5477901454476917 9 82.73515459292432 7.641556432766391 7.082046939333527 2.5412420349757587 10 28.066263338456785 49.47438140265836 11.5446284699455 10.914726788939356 11 34.26754517532566 23.916398326869288 25.431887705214685 16.38416879259037 12 32.41898704270518 23.255039169204057 25.78004365996901 18.545930128121746 13 24.120540095230762 30.20453111547062 27.12032683920053 18.55460195009809 14 19.230296160418085 32.54539212120729 28.324736726139438 19.89957499223518 15 17.61977069225031 28.899510396010253 35.10844644309294 18.372272468646496 16 21.31825852117119 26.039490415424517 34.13892789733979 18.503323166064504 17 20.54708578113206 26.76265842666603 27.79637500143793 24.89388079076398 18 21.491031300852935 27.000071675263275 30.929645862257843 20.57925116162595 19 24.661821064917437 27.683464339786763 26.933042030905312 20.721672564390488 20 26.160763191124303 26.846633519069602 27.973129740190444 19.019473549615654 21 23.928653912009324 28.103782241701374 28.786643978348764 19.180919867940542 22 24.565767363332526 25.239514838106818 27.332211305755173 22.862506492805483 23 20.65601448371246 29.091883263118124 27.833274488827065 22.418827764342353 24 20.318123134562786 26.977816948456635 32.93606655003951 19.767993366941067 25 20.216538934268474 29.500343775799777 29.063699841695005 21.219417448236744 26 20.525538958160226 32.074193631166175 26.401671714905888 20.99859569576771 27 20.147828018302853 31.439292379326726 28.108914544503698 20.303965057866712 28 18.64242626960341 30.04445636082566 31.367971067970274 19.94514630160066 29 19.82113039854101 27.069136543146293 30.266428457026258 22.843304601286437 30 20.579383893594976 29.908981264440133 29.03206538907722 20.479569452887674 31 23.333262542949853 29.183114369828434 26.814291162617014 20.669331924604702 32 23.71592880965085 29.344560688153322 27.40193983348332 19.537570668712508 33 22.999662860798676 29.749658657619655 26.217174277960208 21.033504203621458 34 20.45718199411201 29.22129693291815 27.49290547625558 22.828615596714265 35 20.467800551634063 27.707356094211384 28.46937032838774 23.355473025766816 36 23.68929392786637 29.029985921562485 26.92335259716644 20.357367553404707 37 19.833607203629423 31.94827523655049 27.381808818181092 20.83630874163899 38 19.215474423876888 31.28288987582482 26.871719861215453 22.62991583908284 39 20.422760170144684 29.528792661160946 28.042283096052817 22.00616407264155 40 22.121375421755832 28.45835357495861 27.47556183230289 21.94470917098267 41 18.742638906217785 28.136213086133317 28.80040385913776 24.320744148511146 42 21.06987276313449 27.9548127284649 27.45299739756853 23.522317110832077 43 21.156635226887605 28.11329469948155 28.349601848336913 22.380468225293935 44 20.459084485668043 28.84509028870973 27.90897595516137 22.786849270460856 45 19.94213771030274 30.272578371591113 26.608512366637555 23.17677155146859 46 20.86577523876269 29.921590801497572 27.037988774414938 22.1746451853248 47 20.43966137420062 28.30349961109533 28.338231142990377 22.918607871713668 48 20.520672119295956 26.854464705242115 30.309168151052518 22.31569502440941 49 20.815868018409038 26.86517175074352 29.612015605740037 22.706944625107404 50 19.864091312515654 28.691519400547033 28.768282722633543 22.676106564303772 51 18.487528061750453 28.732002651099865 28.4314089852464 24.34906030190329 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1521.0 1 2406.0 2 3291.0 3 10627.5 4 17964.0 5 12601.0 6 7238.0 7 7540.0 8 7842.0 9 8757.0 10 9672.0 11 10169.5 12 10667.0 13 10840.5 14 11014.0 15 11360.5 16 11707.0 17 11159.0 18 10611.0 19 10650.0 20 10689.0 21 10322.0 22 9955.0 23 11738.5 24 13522.0 25 17080.5 26 23798.0 27 26957.0 28 31033.0 29 35109.0 30 41238.5 31 47368.0 32 50706.5 33 54045.0 34 65249.0 35 76453.0 36 82900.0 37 89347.0 38 99199.0 39 109051.0 40 122942.0 41 136833.0 42 152570.0 43 168307.0 44 175448.5 45 182590.0 46 190985.0 47 199380.0 48 200954.5 49 202529.0 50 190054.5 51 177580.0 52 158420.5 53 139261.0 54 126413.0 55 113565.0 56 105402.5 57 97240.0 58 88466.5 59 79693.0 60 70683.0 61 61673.0 62 53290.5 63 44908.0 64 37619.5 65 30331.0 66 23540.5 67 16750.0 68 13024.5 69 9299.0 70 7924.0 71 6549.0 72 5265.0 73 3981.0 74 3230.5 75 1977.0 76 1474.0 77 1001.0 78 528.0 79 377.0 80 226.0 81 270.0 82 314.0 83 167.5 84 21.0 85 13.5 86 6.0 87 8.5 88 11.0 89 6.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2260194.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.991670277395663 #Duplication Level Percentage of deduplicated Percentage of total 1 78.20744326159705 14.070825324007833 2 8.981984319179444 3.232018006148295 3 3.1904079021806946 1.7220230107929797 4 1.5246591656849615 1.0972465997765195 5 0.8772181437012787 0.7891309801411247 6 0.5505295997947012 0.5942968222471713 7 0.39100435740678957 0.492437503284155 8 0.2997939394002398 0.43150349670805205 9 0.23396069929076374 0.3788409383557505 >10 2.700136567863547 12.06085308063143 >50 1.4591839535387552 19.262795314904185 >100 1.5742336824258716 43.75345557262223 >500 0.006461963324592735 0.7693829234418673 >1k 0.002733907560404619 0.8243388465448578 >5k 0.0 0.0 >10k+ 2.4853705094587443E-4 0.5208515803935179 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11648 0.5153539917369925 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2722 0.12043213989595583 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.848797935044514E-5 0.0 0.0 0.09322208624569395 0.0 2 8.848797935044514E-5 0.0 0.0 0.30577021264546317 0.0 3 8.848797935044514E-5 0.0 0.0 0.44969591105896217 0.0 4 8.848797935044514E-5 0.0 0.0 0.8101074509533253 0.0 5 8.848797935044514E-5 0.0 0.0 1.237637123185001 0.0 6 8.848797935044514E-5 0.0 0.0 1.7573712698998405 0.0 7 8.848797935044514E-5 0.0 0.0 1.98390049703698 0.0 8 8.848797935044514E-5 0.0 0.0 2.667779845446895 0.0 9 8.848797935044514E-5 0.0 0.0 2.8720543457773977 0.0 10 8.848797935044514E-5 0.0 0.0 3.28193066612866 0.0 11 8.848797935044514E-5 0.0 0.0 3.7746759791416133 0.0 12 8.848797935044514E-5 0.0 0.0 4.201011063652058 0.0 13 8.848797935044514E-5 0.0 0.0 4.375597846910487 0.0 14 8.848797935044514E-5 0.0 0.0 4.4472288661946715 0.0 15 8.848797935044514E-5 0.0 0.0 4.566864614276474 0.0 16 8.848797935044514E-5 0.0 0.0 4.81870140350784 0.0 17 8.848797935044514E-5 0.0 0.0 5.114207010548652 0.0 18 8.848797935044514E-5 0.0 0.0 5.477273189823529 0.0 19 8.848797935044514E-5 0.0 0.0 5.6653543899329 0.0 20 8.848797935044514E-5 0.0 0.0 5.880999595609935 0.0 21 8.848797935044514E-5 0.0 0.0 6.147702365372176 0.0 22 8.848797935044514E-5 0.0 0.0 6.426395256336403 0.0 23 8.848797935044514E-5 0.0 0.0 6.705619075176733 0.0 24 8.848797935044514E-5 0.0 0.0 6.919184813339032 0.0 25 8.848797935044514E-5 0.0 0.0 7.10071790297647 0.0 26 8.848797935044514E-5 0.0 0.0 7.279109669346967 0.0 27 8.848797935044514E-5 0.0 0.0 7.45347523265702 0.0 28 8.848797935044514E-5 0.0 0.0 7.655449045524411 0.0 29 8.848797935044514E-5 0.0 0.0 7.866315900316521 0.0 30 8.848797935044514E-5 0.0 0.0 8.120099425093597 0.0 31 8.848797935044514E-5 0.0 0.0 8.3588399933811 0.0 32 1.327319690256677E-4 0.0 0.0 8.578113206211503 0.0 33 1.327319690256677E-4 0.0 0.0 8.793714167898862 0.0 34 1.327319690256677E-4 0.0 0.0 9.028782485043319 0.0 35 1.327319690256677E-4 0.0 0.0 9.273761455875027 0.0 36 1.327319690256677E-4 0.0 0.0 9.527279516714051 0.0 37 1.327319690256677E-4 0.0 0.0 9.770665703917452 0.0 38 1.327319690256677E-4 0.0 0.0 10.01471555096598 0.0 39 1.327319690256677E-4 0.0 0.0 10.262703113095602 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTC 20 7.034736E-4 45.0 38 AACGCGT 25 3.8920065E-5 45.0 15 CGAATTA 35 1.2126293E-7 45.0 40 CGAATCG 25 3.8920065E-5 45.0 19 CGTACTC 20 7.034736E-4 45.0 38 CCGGTCG 20 7.034736E-4 45.0 18 CGACTTA 25 3.8920065E-5 45.0 28 ACGGGAT 1655 0.0 42.41692 5 CGGTCTA 605 0.0 41.652893 31 TATAGCG 60 3.6379788E-12 41.249996 1 CGTAAGG 405 0.0 41.11111 2 CGTTTTT 6190 0.0 41.110664 1 TAGTGCG 170 0.0 41.029415 1 CGCGAGG 165 0.0 40.90909 2 CGACGGT 620 0.0 40.64516 28 ACGTCGA 50 1.0822987E-9 40.5 10 TAATGCG 50 1.0822987E-9 40.5 1 CGTATGG 145 0.0 40.344826 2 TACGGGA 1620 0.0 40.277775 4 CGACGTA 45 1.9297659E-8 40.0 44 >>END_MODULE