SRR1547459_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547459_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1443785
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9064	0.6277943045536558	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2325	0.1610350571587875	No Hit
GAGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT	1876	0.12993624396984316	No Hit
AAGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT	1504	0.10417063482443716	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	1446	0.10015341619423945	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTT	20	7.033888E-4	45.0	22
GTCGAAC	20	7.033888E-4	45.0	31
GCGAATC	35	1.2122109E-7	45.0	14
ACTTCGA	20	7.033888E-4	45.0	11
ACGATTA	25	3.8913044E-5	45.0	35
GTCAATC	25	3.8913044E-5	45.0	42
TATTACG	35	1.2122109E-7	45.0	1
TTGCGAA	20	7.033888E-4	45.0	30
GCGATAT	80	0.0	45.0	9
TCCCGTA	20	7.033888E-4	45.0	14
TACTCGA	20	7.033888E-4	45.0	26
CGTAAGT	25	3.8913044E-5	45.0	24
ACGTATC	20	7.033888E-4	45.0	10
TTCGCGA	20	7.033888E-4	45.0	13
CGTCAAG	25	3.8913044E-5	45.0	22
AGTACGG	150	0.0	45.0	2
ATCGACG	20	7.033888E-4	45.0	25
AATCGCG	20	7.033888E-4	45.0	1
CGAACAT	30	2.1658907E-6	44.999996	20
TAAACGG	120	0.0	44.999996	2