SRR1547458_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547458_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1367195
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9620	0.7036304257988071	No Hit
GAGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT	2662	0.19470521761709192	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2566	0.1876835418502847	No Hit
AAGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT	2036	0.1489180402210365	No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	1741	0.12734101572928513	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT	1627	0.11900277575620156	No Hit
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	1577	0.11534565296098948	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1557	0.11388280384290464	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGG	30	2.1658052E-6	45.000004	1
GTACACG	30	2.1658052E-6	45.000004	1
CAACGAC	30	2.1658052E-6	45.000004	12
CGCTCAG	30	2.1658052E-6	45.000004	12
CGGATTC	30	2.1658052E-6	45.000004	33
CTACGTT	60	0.0	45.000004	12
TCGCTCA	30	2.1658052E-6	45.000004	11
ACTACGG	30	2.1658052E-6	45.000004	2
GCTAGAT	30	2.1658052E-6	45.000004	9
TACTCGA	30	2.1658052E-6	45.000004	16
TATAGTT	30	2.1658052E-6	45.000004	35
ACGTAAG	30	2.1658052E-6	45.000004	1
CGCGTGG	30	2.1658052E-6	45.000004	19
ACGCGGA	30	2.1658052E-6	45.000004	39
AACGTAC	25	3.891196E-5	45.0	34
AGTCCGA	25	3.891196E-5	45.0	19
CGAACAC	20	7.0337567E-4	45.0	16
CTCCGTC	25	3.891196E-5	45.0	21
GTTTCGA	25	3.891196E-5	45.0	8
CATGCGC	45	3.8562575E-10	45.0	35