##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547458_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1367195 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.18676999257604 31.0 31.0 33.0 30.0 34.0 2 31.581050983948888 31.0 31.0 34.0 30.0 34.0 3 31.698198867023358 31.0 31.0 34.0 30.0 34.0 4 35.460789426526574 37.0 35.0 37.0 33.0 37.0 5 35.32237903152074 37.0 35.0 37.0 33.0 37.0 6 35.36221241300619 37.0 35.0 37.0 33.0 37.0 7 35.837323132398815 37.0 35.0 37.0 35.0 37.0 8 35.869742794553815 37.0 35.0 37.0 35.0 37.0 9 37.62184253160668 39.0 37.0 39.0 35.0 39.0 10 36.89629496889617 39.0 37.0 39.0 32.0 39.0 11 36.61446099495683 39.0 35.0 39.0 32.0 39.0 12 35.907106155303374 37.0 35.0 39.0 31.0 39.0 13 35.56128130954253 37.0 35.0 39.0 30.0 39.0 14 36.631138206327556 38.0 35.0 41.0 31.0 41.0 15 36.89956516809965 38.0 35.0 41.0 31.0 41.0 16 37.02064811530177 38.0 35.0 41.0 32.0 41.0 17 36.9524866606446 38.0 35.0 41.0 32.0 41.0 18 36.871983147978156 38.0 35.0 40.0 32.0 41.0 19 36.74167474281284 38.0 35.0 40.0 31.0 41.0 20 36.57548703732825 38.0 35.0 40.0 31.0 41.0 21 36.477449815132445 38.0 35.0 40.0 31.0 41.0 22 36.36043212562948 38.0 35.0 40.0 31.0 41.0 23 36.30822669772783 38.0 35.0 40.0 31.0 41.0 24 36.18061432348714 37.0 35.0 40.0 31.0 41.0 25 36.09701834778507 37.0 35.0 40.0 30.0 41.0 26 35.960391165854176 37.0 35.0 40.0 30.0 41.0 27 35.870604412684365 37.0 34.0 40.0 30.0 41.0 28 35.85559192361002 37.0 35.0 40.0 30.0 41.0 29 35.84950866555246 37.0 35.0 40.0 30.0 41.0 30 35.76716635154459 37.0 35.0 40.0 30.0 41.0 31 35.60829289165042 37.0 34.0 40.0 30.0 41.0 32 35.39249631544878 37.0 34.0 40.0 29.0 41.0 33 35.21659602324467 37.0 34.0 40.0 27.0 41.0 34 35.06882924527957 37.0 34.0 40.0 27.0 41.0 35 34.934667695537215 37.0 34.0 40.0 26.0 41.0 36 34.81002636785535 37.0 34.0 40.0 25.0 41.0 37 34.72959380337114 37.0 34.0 40.0 24.0 41.0 38 34.62123471779812 37.0 33.0 40.0 24.0 41.0 39 34.5401343626915 37.0 34.0 40.0 24.0 41.0 40 34.3590746016479 37.0 33.0 40.0 23.0 41.0 41 34.283108115521195 36.0 33.0 40.0 23.0 41.0 42 34.21917868336265 36.0 33.0 40.0 23.0 41.0 43 34.17273761241081 36.0 33.0 40.0 23.0 41.0 44 34.039973815000785 36.0 33.0 40.0 23.0 41.0 45 33.90721660041179 36.0 33.0 40.0 22.0 41.0 46 33.84839836307184 36.0 33.0 40.0 22.0 41.0 47 33.801585728444 35.0 33.0 40.0 22.0 41.0 48 33.76279462695519 35.0 33.0 40.0 22.0 41.0 49 33.728355501592674 36.0 33.0 40.0 22.0 41.0 50 33.55846971353757 35.0 33.0 40.0 21.0 41.0 51 32.96852314410161 35.0 32.0 39.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 4.0 14 13.0 15 39.0 16 176.0 17 387.0 18 861.0 19 1646.0 20 2851.0 21 4565.0 22 6734.0 23 9930.0 24 14392.0 25 20214.0 26 24837.0 27 27674.0 28 30442.0 29 34496.0 30 40124.0 31 47120.0 32 57049.0 33 71842.0 34 116067.0 35 182658.0 36 99291.0 37 115450.0 38 164528.0 39 293539.0 40 263.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.29561254978258 25.37611679387359 28.21916405487147 14.109106601472357 2 29.036604142057275 27.722965634017093 30.401515511686334 12.838914712239294 3 27.9765505286371 26.895358745460594 32.146840794473356 12.981249931428948 4 23.956860579507676 30.08692980884219 31.766207453947683 14.19000215770245 5 22.513394212237465 33.02418455304474 30.700887583702396 13.761533651015402 6 20.439439875072686 42.15740987935152 27.16920410036608 10.233946145209718 7 86.74570928068052 3.98948211484097 7.723550773664327 1.541257830814185 8 86.2489988626348 3.8242533069532874 6.674395386173881 3.25235244423802 9 81.90323984508427 6.486053562220459 9.037993848719458 2.5727127439758046 10 40.345890673971155 32.78815384784175 14.752979640797397 12.112975837389692 11 35.959025596202444 24.853294519070065 24.890889741404848 14.296790143322644 12 35.17698645767429 24.03951155467947 25.429949641419107 15.35355234622713 13 20.58506650477803 40.594648166501486 24.71505527741105 14.105230051309434 14 15.200318901107742 40.33945413785159 26.8730502964098 17.587176664630867 15 13.63514348721287 27.95373008239498 42.52868098552145 15.882445444870703 16 14.959021939079648 25.00031085543759 41.214018483098606 18.82664872238415 17 14.507367273870955 26.8678571820406 27.9731128332096 30.651662710878842 18 18.17897227535209 27.463456200468844 33.790644348465285 20.56692717571378 19 23.266542080683443 30.058257966127726 26.474716481555298 20.200483471633525 20 25.857540438635308 27.375100113736515 26.95694469333197 19.810414754296204 21 19.62338949454906 32.62387589188082 29.101408357988433 18.651326255581687 22 21.577170776663166 27.805104611997557 25.136502108331293 25.481222503007984 23 17.440233470719246 32.77498820577899 25.608636661193174 24.176141662308595 24 16.10574936274635 28.19861102476238 38.67465869901513 17.020980913476134 25 15.68013341183957 29.871964130939627 33.99756435621839 20.450338101002416 26 15.571151152542248 37.22804720614104 27.404942235745448 19.79585940557126 27 15.154385438799878 38.53049491842788 27.285281177886112 19.029838464886137 28 14.383025098833743 33.373951777178824 33.663230190280096 18.579792933707335 29 14.279967378464667 28.29984018373385 32.71647424105559 24.703718196745893 30 16.948643024586836 35.79255336656439 28.35689129933916 18.901912309509616 31 23.569132420759292 32.94848211118385 24.68769999890286 18.794685469154 32 25.35666090060306 31.068794136900735 25.253164325498556 18.32138063699765 33 24.641035112035954 31.44043095535019 24.67416864456058 19.244365288053277 34 17.826791350173167 31.0733289691668 26.38438554851356 24.715494132146475 35 18.387135704855563 30.34658552730225 29.353384118578553 21.912894649263638 36 25.718862342240868 29.768979553026455 25.47858937459543 19.03356873013725 37 17.418290733947973 36.58234560541839 28.504785345177535 17.494578315456096 38 18.98822040747662 34.11130087514949 26.28191296779172 20.618565749582174 39 18.74385146230055 33.52660008265097 27.36281218114461 20.366736273903868 40 22.833099886994905 28.633442925113094 27.08355428450221 21.449902903389788 41 16.53509557890425 27.638778667271314 29.036896711880892 26.789229041943543 42 20.083162972363123 28.115082340119734 26.043175991720275 25.758578695796867 43 19.566265236487844 28.415112694238935 27.54018263671239 24.478439432560826 44 18.29380593112175 30.88527971503699 27.49776001228793 23.323154341553327 45 17.38925317895399 36.54255610940649 23.191059066190263 22.877131645449257 46 20.93849085170733 32.51372335328903 25.917882964756306 20.62990283024733 47 19.273622270414975 29.516784365068627 26.864931483804433 24.344661880711968 48 19.041248688007197 27.774384780517774 32.30921704658078 20.875149484894255 49 20.231788442760543 26.80122440471184 30.854486741101304 22.112500411426314 50 19.124996800017556 31.756772077136038 28.24608047864423 20.87215064420218 51 16.398172901451513 30.92024180895922 27.920377122502643 24.761208167086625 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1687.0 1 1891.5 2 2096.0 3 7427.0 4 12758.0 5 8872.5 6 4987.0 7 5838.5 8 6690.0 9 7974.5 10 9259.0 11 10422.0 12 11585.0 13 12087.5 14 12590.0 15 12260.5 16 11931.0 17 11457.0 18 10983.0 19 10601.0 20 10219.0 21 9934.0 22 9649.0 23 10301.5 24 10954.0 25 10724.0 26 11383.5 27 12273.0 28 16315.0 29 20357.0 30 21317.0 31 22277.0 32 29546.5 33 36816.0 34 39733.0 35 42650.0 36 46776.5 37 50903.0 38 57814.5 39 64726.0 40 78714.5 41 92703.0 42 108449.5 43 124196.0 44 133908.0 45 143620.0 46 142176.0 47 140732.0 48 137694.5 49 134657.0 50 119226.5 51 103796.0 52 88820.0 53 73844.0 54 64058.0 55 54272.0 56 48827.0 57 43382.0 58 35236.5 59 27091.0 60 23777.0 61 20463.0 62 16535.0 63 12607.0 64 10480.5 65 8354.0 66 6991.0 67 5628.0 68 4066.5 69 2505.0 70 1873.0 71 1241.0 72 986.0 73 731.0 74 575.0 75 361.5 76 304.0 77 298.0 78 292.0 79 320.5 80 349.0 81 224.5 82 100.0 83 55.0 84 10.0 85 9.0 86 8.0 87 6.0 88 4.0 89 3.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1367195.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.23772853437303 #Duplication Level Percentage of deduplicated Percentage of total 1 79.02463067416078 16.783036537869144 2 9.045013357953653 3.8419107657199505 3 3.331162794520301 2.1223899340147674 4 1.6721685516126492 1.4205224705146073 5 1.0156380791905635 1.0784922907510621 6 0.6447222688724197 0.8215461915826503 7 0.44969757473441496 0.6685388510342802 8 0.3242254126924481 0.550864903896582 9 0.2644201846863395 0.5054115691239531 >10 2.184656641368277 10.432821197122816 >50 0.8000892345989776 12.479062044646051 >100 1.2331074206798505 46.318566111079456 >500 0.005931756126643305 0.8052896149075192 >1k 0.004187121971748215 1.458665756863864 >5k 3.489268309790179E-4 0.7128817608733169 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9620 0.7036304257988071 No Hit GAGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT 2662 0.19470521761709192 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2566 0.1876835418502847 No Hit AAGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT 2036 0.1489180402210365 No Hit GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC 1741 0.12734101572928513 No Hit AAGAGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT 1627 0.11900277575620156 No Hit CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT 1577 0.11534565296098948 Illumina Single End Adapter 1 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1557 0.11388280384290464 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12873072239146574 0.0 2 0.0 0.0 0.0 0.4685505725225736 0.0 3 0.0 0.0 0.0 0.6958773254729574 0.0 4 0.0 0.0 0.0 1.3641799450700156 0.0 5 0.0 0.0 0.0 2.0888753981692445 0.0 6 0.0 0.0 0.0 3.100801275604431 0.0 7 0.0 0.0 0.0 3.464319281448513 0.0 8 0.0 0.0 0.0 4.443331053726791 0.0 9 0.0 0.0 0.0 4.702401632539615 0.0 10 0.0 0.0 0.0 5.275911629284776 0.0 11 0.0 0.0 0.0 6.0993493978547315 0.0 12 0.0 0.0 0.0 6.699410106093132 0.0 13 0.0 0.0 0.0 6.94421790600463 0.0 14 0.0 0.0 0.0 7.040692805342325 0.0 15 0.0 0.0 0.0 7.195901096771126 0.0 16 0.0 0.0 0.0 7.572145889942546 0.0 17 0.0 0.0 0.0 8.012024619750658 0.0 18 0.0 0.0 0.0 8.510783026561683 0.0 19 0.0 0.0 0.0 8.762466217328178 0.0 20 0.0 0.0 0.0 8.990378109925796 0.0 21 0.0 0.0 0.0 9.32390770884914 0.0 22 0.0 0.0 0.0 9.6577298775961 0.0 23 0.0 0.0 0.0 10.030390690428213 0.0 24 0.0 0.0 0.0 10.295458950625186 0.0 25 0.0 0.0 0.0 10.529149097239237 0.0 26 0.0 0.0 0.0 10.745138769524464 0.0 27 0.0 0.0 0.0 10.94437881940762 0.0 28 0.0 0.0 0.0 11.161611913443219 0.0 29 0.0 0.0 0.0 11.409491696502693 0.0 30 0.0 0.0 0.0 11.709595193077798 0.0 31 0.0 0.0 0.0 11.997264472149181 0.0 32 0.0 0.0 0.0 12.233587747175786 0.0 33 0.0 0.0 0.0 12.458061944345905 0.0 34 0.0 0.0 0.0 12.698261769535435 0.0 35 0.0 0.0 0.0 12.97854366056049 0.0 36 0.0 0.0 0.0 13.238491948844166 0.0 37 0.0 0.0 0.0 13.503340781673426 0.0 38 7.31424559042419E-5 0.0 0.0 13.75378055068955 0.0 39 7.31424559042419E-5 0.0 0.0 13.996320934468017 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGG 30 2.1658052E-6 45.000004 1 GTACACG 30 2.1658052E-6 45.000004 1 CAACGAC 30 2.1658052E-6 45.000004 12 CGCTCAG 30 2.1658052E-6 45.000004 12 CGGATTC 30 2.1658052E-6 45.000004 33 CTACGTT 60 0.0 45.000004 12 TCGCTCA 30 2.1658052E-6 45.000004 11 ACTACGG 30 2.1658052E-6 45.000004 2 GCTAGAT 30 2.1658052E-6 45.000004 9 TACTCGA 30 2.1658052E-6 45.000004 16 TATAGTT 30 2.1658052E-6 45.000004 35 ACGTAAG 30 2.1658052E-6 45.000004 1 CGCGTGG 30 2.1658052E-6 45.000004 19 ACGCGGA 30 2.1658052E-6 45.000004 39 AACGTAC 25 3.891196E-5 45.0 34 AGTCCGA 25 3.891196E-5 45.0 19 CGAACAC 20 7.0337567E-4 45.0 16 CTCCGTC 25 3.891196E-5 45.0 21 GTTTCGA 25 3.891196E-5 45.0 8 CATGCGC 45 3.8562575E-10 45.0 35 >>END_MODULE