SRR1547457_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547457_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	488410
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5412	1.1080854200364447	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	669	0.13697508241027007	No Hit
GGTAATGGGGAAAAGAAAGAAGGAGGGAAAAGAAGGAGGAAAAAGAAAGAA	546	0.11179132286398723	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	536	0.10974386273827318	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	525	0.10749165659998772	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	25	3.8874994E-5	45.0	6
TTAGGCG	25	3.8874994E-5	45.0	1
AACCGCA	20	7.0292986E-4	45.0	15
CGGCATA	20	7.0292986E-4	45.0	33
GACGTCG	40	6.8012014E-9	45.0	19
CGTTGCA	20	7.0292986E-4	45.0	18
GACAACG	20	7.0292986E-4	45.0	1
TAGCGAG	50	2.1827873E-11	45.0	1
TCTTACG	20	7.0292986E-4	45.0	32
TGAGTCG	20	7.0292986E-4	45.0	1
CGCGACC	25	3.8874994E-5	45.0	10
TAACGAG	20	7.0292986E-4	45.0	1
TGCGGAT	20	7.0292986E-4	45.0	4
CGTAGGT	20	7.0292986E-4	45.0	3
TACGAAT	45	3.8380676E-10	45.0	12
TGCGACC	20	7.0292986E-4	45.0	43
TCGTCCC	70	0.0	45.0	38
CGAATAT	45	3.8380676E-10	45.0	14
TCCGTTG	20	7.0292986E-4	45.0	16
AGCGACG	40	6.8012014E-9	45.0	16