Basic Statistics
Measure | Value |
---|---|
Filename | SRR1547454_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3736820 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14575 | 0.39003751853179974 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 11410 | 0.0 | 41.154686 | 1 |
CGGTCTA | 905 | 0.0 | 40.773483 | 31 |
CGACGGT | 900 | 0.0 | 40.75 | 28 |
CTCACGA | 900 | 0.0 | 40.25 | 24 |
ACGGTCT | 920 | 0.0 | 39.864132 | 30 |
CACGACG | 920 | 0.0 | 39.375004 | 26 |
CGTTAGG | 540 | 0.0 | 38.75 | 2 |
TAGGGAT | 7520 | 0.0 | 38.44747 | 5 |
TCTCACG | 950 | 0.0 | 38.36842 | 23 |
TAGGGAC | 5520 | 0.0 | 38.233696 | 5 |
GACCGAT | 2335 | 0.0 | 38.158463 | 9 |
ATAGGGA | 7695 | 0.0 | 38.040936 | 4 |
TAAGGGA | 6945 | 0.0 | 37.77538 | 4 |
TCACGAC | 970 | 0.0 | 37.345364 | 25 |
GGGCGAT | 6545 | 0.0 | 37.12758 | 7 |
GGACCGA | 2605 | 0.0 | 37.05374 | 8 |
CGAGGGA | 3480 | 0.0 | 36.98276 | 4 |
AACGGGA | 2080 | 0.0 | 36.887016 | 4 |
GTAGGGA | 7520 | 0.0 | 36.771942 | 4 |
AGGGCGA | 3245 | 0.0 | 36.748844 | 6 |