##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547454_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3736820 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.226677763445924 31.0 31.0 33.0 30.0 34.0 2 31.644279092918577 31.0 31.0 34.0 30.0 34.0 3 31.800029436793853 31.0 31.0 34.0 30.0 34.0 4 35.55222729486569 37.0 35.0 37.0 33.0 37.0 5 35.42112651933997 37.0 35.0 37.0 33.0 37.0 6 35.464660593766894 37.0 35.0 37.0 33.0 37.0 7 35.88585187405334 37.0 35.0 37.0 35.0 37.0 8 35.92144791560739 37.0 35.0 37.0 35.0 37.0 9 37.653931150015254 39.0 37.0 39.0 35.0 39.0 10 36.92344694151712 39.0 37.0 39.0 32.0 39.0 11 36.77430248178933 39.0 37.0 39.0 32.0 39.0 12 36.4902823791352 39.0 35.0 39.0 32.0 39.0 13 36.43537018106304 39.0 35.0 39.0 32.0 39.0 14 37.5659135307561 40.0 36.0 41.0 32.0 41.0 15 37.63171011715844 40.0 36.0 41.0 32.0 41.0 16 37.638502523536054 40.0 36.0 41.0 32.0 41.0 17 37.55384872699247 39.0 36.0 41.0 32.0 41.0 18 37.448475174078496 39.0 36.0 41.0 32.0 41.0 19 37.40558442740084 39.0 36.0 41.0 32.0 41.0 20 37.307326817989626 39.0 35.0 41.0 32.0 41.0 21 37.25419608115992 39.0 35.0 41.0 32.0 41.0 22 37.1643919161212 39.0 35.0 41.0 31.0 41.0 23 37.048245299479234 39.0 35.0 41.0 31.0 41.0 24 36.9794311740999 39.0 35.0 41.0 31.0 41.0 25 36.880345587959816 39.0 35.0 41.0 31.0 41.0 26 36.74819338367917 39.0 35.0 41.0 31.0 41.0 27 36.66656167543526 39.0 35.0 40.0 30.0 41.0 28 36.55357710566739 38.0 35.0 40.0 30.0 41.0 29 36.59414100759469 38.0 35.0 40.0 30.0 41.0 30 36.54348938402171 38.0 35.0 40.0 30.0 41.0 31 36.491381709581944 38.0 35.0 40.0 30.0 41.0 32 36.447661648139324 39.0 35.0 41.0 30.0 41.0 33 36.366051080865546 39.0 35.0 41.0 30.0 41.0 34 36.241178060489936 39.0 35.0 41.0 30.0 41.0 35 36.130147826226576 39.0 35.0 41.0 29.0 41.0 36 36.09227096836347 39.0 35.0 41.0 29.0 41.0 37 36.0583041195455 39.0 35.0 41.0 29.0 41.0 38 35.949478701141615 39.0 35.0 41.0 28.0 41.0 39 35.861641984361036 38.0 35.0 41.0 28.0 41.0 40 35.776469029816795 38.0 35.0 41.0 27.0 41.0 41 35.674052001434376 38.0 35.0 40.0 27.0 41.0 42 35.62992062769949 38.0 34.0 40.0 27.0 41.0 43 35.594794504418196 38.0 34.0 40.0 27.0 41.0 44 35.46788847201631 38.0 34.0 40.0 27.0 41.0 45 35.343639511670354 38.0 34.0 40.0 26.0 41.0 46 35.2905764794665 38.0 34.0 40.0 26.0 41.0 47 35.22951841405259 38.0 34.0 40.0 26.0 41.0 48 35.14240022264921 38.0 34.0 40.0 26.0 41.0 49 35.055559272322455 38.0 34.0 40.0 26.0 41.0 50 34.966088813483125 38.0 34.0 40.0 26.0 41.0 51 34.376246915826826 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 5.0 12 3.0 13 7.0 14 21.0 15 78.0 16 216.0 17 619.0 18 1326.0 19 2589.0 20 4568.0 21 7249.0 22 11431.0 23 17321.0 24 25285.0 25 36678.0 26 49111.0 27 58783.0 28 66616.0 29 77743.0 30 93015.0 31 112216.0 32 136409.0 33 170288.0 34 240471.0 35 307493.0 36 306824.0 37 398370.0 38 592089.0 39 1019535.0 40 457.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.54483223703577 23.601538206282346 28.792850605595135 14.060778951086753 2 30.71724086255158 26.201877532233294 29.63265557345551 13.448226031759624 3 28.598246637515324 25.870660079961038 32.018507715116066 13.512585567407582 4 25.623310729443748 28.79394779518414 30.771832734785193 14.810908740586918 5 23.10831134494035 32.21019476453241 30.020980405799584 14.660513484727655 6 21.41470555177932 41.28100898625034 26.67048452962679 10.633800932343544 7 90.4762338030732 2.5144641700697385 5.710470399965746 1.298831626891314 8 90.91505611723338 2.1653973164348295 5.139236034917389 1.7803105314144112 9 84.87398376159409 5.690159012208242 7.0444656151487095 2.3913916110489666 10 27.306613644756773 45.792251165429434 14.042822506837366 12.858312682976432 11 29.94176866961748 25.81028789184387 27.16815367076819 17.079789767770457 12 28.936555681033603 23.71816143137748 27.370598530301166 19.974684357287746 13 24.77727051343121 25.687215332823094 29.391407667481978 20.14410648626372 14 21.270331458298767 27.991099383968187 29.461922169117056 21.276646988615987 15 20.297284857178028 26.992603336526777 32.51261768027361 20.19749412602159 16 23.308133653748374 26.556189487318093 31.366241884811146 18.769434974122383 17 23.238850145310717 26.743648342708504 28.518633490507973 21.498868021472802 18 22.751002189027034 26.378792663280542 30.51412698497653 20.356078162715892 19 24.334648176792033 27.792160178975706 27.340305393355845 20.532886250876416 20 25.4740126631735 27.444859532971883 27.670398895317412 19.410728908537205 21 25.175229205581218 27.19360311708886 28.826408550585793 18.80475912674413 22 24.729716711000265 24.51303514753186 28.59516915452176 22.16207898694612 23 21.61688280409546 28.066966029939895 28.988337677490488 21.327813488474156 24 20.950112662638286 26.822485428787047 31.90967186003072 20.31773004854395 25 21.928431125930604 28.28511943310087 28.869332748165554 20.917116692802974 26 21.40354633083745 29.519725327952646 27.81857301127697 21.258155329932936 27 20.5492638125465 28.62412425538292 29.021975904646197 21.804636027424387 28 20.06484122863825 28.184258273077106 30.684726585706564 21.066173912578073 29 20.834452823523744 26.104227658811503 30.13193035789789 22.92938915976686 30 21.246862305382653 27.20040034039638 29.747485830197867 21.8052515240231 31 22.6672411301588 27.489683741791147 28.07740271139632 21.765672416653732 32 22.995648706654322 26.736182101358906 28.197183701650065 22.070985490336703 33 22.456179318243855 26.661064755594328 27.8837621292971 22.998993796864713 34 20.50484101455248 27.1251224303017 29.83485958649333 22.53517696865249 35 21.04230334883671 27.04955015226851 29.476426480269318 22.431720018625462 36 22.05562483609058 28.03881375072923 28.472952938594847 21.432608474585344 37 21.25510460766106 28.97107701200486 28.21468521363084 21.55913316670324 38 21.23985099630167 28.672025947195745 29.095112957006226 20.993010099496363 39 21.181512623032418 28.59158321781622 28.38983413704701 21.837070022104356 40 23.007022013369657 27.102723706252913 29.062438115831107 20.827816164546327 41 20.02336211002938 27.172087496855614 29.762766202278947 23.041784190836058 42 21.872982910603135 27.4873823197264 27.83492381222537 22.804710957445103 43 21.383903961122023 27.072965783741253 29.000192677196118 22.542937577940602 44 21.205811358320712 27.30061924309975 28.5546266611718 22.938942737407743 45 21.117902387591588 27.66063123190306 28.3673016093898 22.85416477111555 46 21.56263882124373 27.970600671158902 28.118721265675095 22.348039241922276 47 21.23176925835336 27.331741962417244 29.02516043052649 22.41132834870291 48 20.897126433705665 27.20516374885598 29.87898801654883 22.018721800889526 49 21.049234375752647 27.009596394795576 29.182326148971587 22.758843080480197 50 21.034382175218504 27.672860881712257 29.65703459090885 21.635722352160393 51 20.21376464480494 27.096649022430835 29.596314513409798 23.093271819354424 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1433.0 1 2421.0 2 3409.0 3 15206.5 4 27004.0 5 19639.0 6 12274.0 7 12399.5 8 12525.0 9 13290.0 10 14055.0 11 14450.0 12 14845.0 13 14883.5 14 14922.0 15 14496.5 16 14071.0 17 13769.5 18 13468.0 19 13668.5 20 13869.0 21 16102.0 22 18335.0 23 18637.5 24 18940.0 25 23252.5 26 35634.0 27 43703.0 28 50678.0 29 57653.0 30 68478.0 31 79303.0 32 87528.0 33 95753.0 34 114268.0 35 132783.0 36 144194.5 37 155606.0 38 167426.5 39 179247.0 40 196360.0 41 213473.0 42 229342.5 43 245212.0 44 257391.5 45 269571.0 46 288288.0 47 307005.0 48 312689.0 49 318373.0 50 312037.5 51 305702.0 52 280677.5 53 255653.0 54 231994.0 55 208335.0 56 189953.5 57 171572.0 58 155250.5 59 138929.0 60 124093.0 61 109257.0 62 93352.0 63 77447.0 64 68154.0 65 58861.0 66 48511.5 67 38162.0 68 30599.5 69 23037.0 70 19798.5 71 16560.0 72 14049.5 73 11539.0 74 9764.0 75 6521.0 76 5053.0 77 3609.5 78 2166.0 79 1629.5 80 1093.0 81 899.5 82 706.0 83 423.5 84 141.0 85 112.0 86 83.0 87 94.0 88 105.0 89 64.5 90 24.0 91 14.5 92 5.0 93 3.0 94 1.0 95 2.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3736820.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.097437670770937 #Duplication Level Percentage of deduplicated Percentage of total 1 77.36139608036862 14.00043043688294 2 7.701896182179587 2.787691722074874 3 2.6242450362894654 1.4247633293123585 4 1.3599749846071247 0.984482500709404 5 0.8987868994612834 0.813286994615302 6 0.6127576010266781 0.6653605495122858 7 0.5054945053089647 0.6403708711922322 8 0.3978619588309475 0.5760225601211124 9 0.33019413699966704 0.5378101032244927 >10 4.933464084888758 22.210403689246032 >50 2.21066459622003 28.8162686390688 >100 1.0589247088129983 25.399430620510806 >500 0.0026933120726351733 0.33117513291264594 >1k 0.0014962844847973187 0.4178276615570014 >5k 0.0 0.0 >10k+ 1.4962844847973188E-4 0.3946751890598377 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14575 0.39003751853179974 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6760721683142352E-5 0.0 0.0 0.04313828335322547 0.0 2 2.6760721683142352E-5 0.0 0.0 0.1308599290305661 0.0 3 2.6760721683142352E-5 0.0 0.0 0.21625339192147333 0.0 4 2.6760721683142352E-5 0.0 0.0 0.39959109617268157 0.0 5 2.6760721683142352E-5 0.0 0.0 0.6855026466353744 0.0 6 2.6760721683142352E-5 0.0 0.0 1.2884217061565717 0.0 7 2.6760721683142352E-5 0.0 0.0 1.5444415304991945 0.0 8 2.6760721683142352E-5 0.0 0.0 2.251004865099202 0.0 9 2.6760721683142352E-5 0.0 0.0 2.5368628941185287 0.0 10 2.6760721683142352E-5 0.0 0.0 3.030009473295476 0.0 11 2.6760721683142352E-5 0.0 0.0 3.471240252407127 0.0 12 2.6760721683142352E-5 0.0 0.0 3.830663505333412 0.0 13 2.6760721683142352E-5 0.0 0.0 4.012663173500463 0.0 14 2.6760721683142352E-5 0.0 0.0 4.099073543815329 0.0 15 5.3521443366284704E-5 0.0 0.0 4.190729015580092 0.0 16 5.3521443366284704E-5 0.0 0.0 4.3584384583683455 0.0 17 5.3521443366284704E-5 0.0 0.0 4.545415620768461 0.0 18 5.3521443366284704E-5 0.0 0.0 4.765629599499039 0.0 19 5.3521443366284704E-5 0.0 0.0 4.896569810694655 0.0 20 5.3521443366284704E-5 0.0 0.0 5.04343265129174 0.0 21 5.3521443366284704E-5 0.0 0.0 5.236163368853731 0.0 22 5.3521443366284704E-5 0.0 0.0 5.4484561739660995 0.0 23 5.3521443366284704E-5 0.0 0.0 5.670623685379548 0.0 24 5.3521443366284704E-5 0.0 0.0 5.851552924679273 0.0 25 5.3521443366284704E-5 0.0 0.0 6.008558078794269 0.0 26 5.3521443366284704E-5 0.0 0.0 6.151112443200368 0.0 27 5.3521443366284704E-5 0.0 0.0 6.29896543049973 0.0 28 5.3521443366284704E-5 0.0 0.0 6.454605787808886 0.0 29 5.3521443366284704E-5 0.0 0.0 6.62266311997902 0.0 30 5.3521443366284704E-5 0.0 0.0 6.824465722191596 0.0 31 8.028216504942705E-5 0.0 0.0 7.002478042827859 0.0 32 8.028216504942705E-5 0.0 0.0 7.167645217056213 0.0 33 8.028216504942705E-5 0.0 0.0 7.339475810983671 0.0 34 8.028216504942705E-5 0.0 0.0 7.521930411419335 0.0 35 8.028216504942705E-5 0.0 0.0 7.711316038770933 0.0 36 8.028216504942705E-5 0.0 0.0 7.887615673219475 0.0 37 8.028216504942705E-5 0.0 0.0 8.066778704888113 0.0 38 8.028216504942705E-5 0.0 0.0 8.262158733896737 0.0 39 8.028216504942705E-5 0.0 0.0 8.476003660866727 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 11410 0.0 41.154686 1 CGGTCTA 905 0.0 40.773483 31 CGACGGT 900 0.0 40.75 28 CTCACGA 900 0.0 40.25 24 ACGGTCT 920 0.0 39.864132 30 CACGACG 920 0.0 39.375004 26 CGTTAGG 540 0.0 38.75 2 TAGGGAT 7520 0.0 38.44747 5 TCTCACG 950 0.0 38.36842 23 TAGGGAC 5520 0.0 38.233696 5 GACCGAT 2335 0.0 38.158463 9 ATAGGGA 7695 0.0 38.040936 4 TAAGGGA 6945 0.0 37.77538 4 TCACGAC 970 0.0 37.345364 25 GGGCGAT 6545 0.0 37.12758 7 GGACCGA 2605 0.0 37.05374 8 CGAGGGA 3480 0.0 36.98276 4 AACGGGA 2080 0.0 36.887016 4 GTAGGGA 7520 0.0 36.771942 4 AGGGCGA 3245 0.0 36.748844 6 >>END_MODULE