##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547451_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1295000 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.22446640926641 31.0 31.0 33.0 30.0 34.0 2 31.619524324324324 31.0 31.0 34.0 30.0 34.0 3 31.745342084942084 31.0 31.0 34.0 30.0 34.0 4 35.49972972972973 37.0 35.0 37.0 33.0 37.0 5 35.37878378378378 37.0 35.0 37.0 33.0 37.0 6 35.416718146718146 37.0 35.0 37.0 33.0 37.0 7 35.841160617760615 37.0 35.0 37.0 35.0 37.0 8 35.86375984555985 37.0 35.0 37.0 35.0 37.0 9 37.606742857142855 39.0 37.0 39.0 35.0 39.0 10 36.969566023166024 39.0 37.0 39.0 32.0 39.0 11 36.75008803088803 39.0 35.0 39.0 32.0 39.0 12 36.02930965250965 38.0 35.0 39.0 32.0 39.0 13 35.68787953667954 38.0 35.0 39.0 30.0 39.0 14 36.75275135135135 39.0 35.0 41.0 31.0 41.0 15 37.00075907335907 39.0 35.0 41.0 32.0 41.0 16 37.11723783783784 39.0 35.0 41.0 32.0 41.0 17 37.041153667953665 38.0 35.0 41.0 32.0 41.0 18 36.94821698841699 38.0 35.0 40.0 32.0 41.0 19 36.82147644787645 38.0 35.0 40.0 31.0 41.0 20 36.66834362934363 38.0 35.0 40.0 31.0 41.0 21 36.58063166023166 38.0 35.0 40.0 31.0 41.0 22 36.46973204633205 38.0 35.0 40.0 31.0 41.0 23 36.39548185328185 38.0 35.0 40.0 31.0 41.0 24 36.30898841698842 38.0 35.0 40.0 31.0 41.0 25 36.18620694980695 38.0 35.0 40.0 31.0 41.0 26 36.01396833976834 37.0 35.0 40.0 30.0 41.0 27 35.898714285714284 37.0 34.0 40.0 30.0 41.0 28 35.8796138996139 37.0 35.0 40.0 30.0 41.0 29 35.892785328185326 37.0 35.0 40.0 30.0 41.0 30 35.80262934362934 37.0 35.0 40.0 30.0 41.0 31 35.634816988416986 37.0 34.0 40.0 30.0 41.0 32 35.40034671814672 37.0 34.0 40.0 29.0 41.0 33 35.22793204633204 37.0 34.0 40.0 27.0 41.0 34 35.07004633204633 37.0 34.0 40.0 26.0 41.0 35 34.94765945945946 37.0 34.0 40.0 25.0 41.0 36 34.81305868725869 37.0 34.0 40.0 24.0 41.0 37 34.72166254826255 37.0 34.0 40.0 24.0 41.0 38 34.582992277992275 37.0 33.0 40.0 24.0 41.0 39 34.46970810810811 37.0 33.0 40.0 23.0 41.0 40 34.27657992277992 37.0 33.0 40.0 23.0 41.0 41 34.19006023166023 36.0 33.0 40.0 23.0 41.0 42 34.10251583011583 36.0 33.0 40.0 22.0 41.0 43 34.02864864864865 36.0 33.0 40.0 22.0 41.0 44 33.85429111969112 36.0 33.0 40.0 21.0 41.0 45 33.72235444015444 36.0 33.0 40.0 20.0 41.0 46 33.65908725868726 36.0 33.0 40.0 20.0 41.0 47 33.629219305019305 35.0 33.0 40.0 20.0 41.0 48 33.557633204633206 35.0 33.0 40.0 20.0 41.0 49 33.52290193050193 36.0 33.0 40.0 20.0 41.0 50 33.36096370656371 35.0 33.0 40.0 20.0 41.0 51 32.81117837837838 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 4.0 14 11.0 15 55.0 16 132.0 17 375.0 18 879.0 19 1583.0 20 2764.0 21 4378.0 22 6529.0 23 9725.0 24 13982.0 25 18994.0 26 23733.0 27 26634.0 28 29199.0 29 33365.0 30 38524.0 31 44452.0 32 53364.0 33 67019.0 34 108090.0 35 164156.0 36 95378.0 37 112824.0 38 160829.0 39 277842.0 40 179.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.36239382239382 25.01675675675676 28.615598455598455 14.005250965250966 2 29.0211583011583 28.444169884169884 29.614285714285714 12.9203861003861 3 28.26849420849421 26.50880308880309 31.48285714285714 13.739845559845559 4 24.196525096525097 29.226409266409263 31.129652509652512 15.447413127413128 5 22.867799227799228 33.12131274131274 30.28872586872587 13.722162162162164 6 20.814826254826254 42.2988416988417 26.52247104247104 10.363861003861004 7 85.99250965250965 4.524015444015443 7.7867181467181465 1.696756756756757 8 85.1423166023166 4.383397683397684 6.760772200772201 3.7135135135135133 9 80.56262548262548 7.207181467181467 9.384478764478764 2.8457142857142856 10 37.156138996139 38.25374517374517 12.868648648648648 11.721467181467181 11 37.37289575289575 22.922625482625484 24.375521235521237 15.32895752895753 12 33.869884169884166 22.614903474903475 25.1984555984556 18.316756756756757 13 21.612586872586874 36.964710424710425 25.879691119691117 15.543011583011582 14 16.295135135135137 38.99899613899614 27.244247104247105 17.46162162162162 15 14.747799227799227 26.46849420849421 42.573281853281856 16.21042471042471 16 17.113127413127412 23.7 40.396138996138994 18.79073359073359 17 16.514208494208493 24.648108108108108 27.93969111969112 30.897992277992277 18 19.03760617760618 24.892200772200773 34.58332046332047 21.48687258687259 19 24.848880308880307 27.56030888030888 27.404710424710427 20.186100386100385 20 26.555366795366798 26.416447876447872 26.884710424710423 20.143474903474903 21 21.259305019305017 30.744942084942085 29.063397683397685 18.932355212355212 22 22.28262548262548 26.34996138996139 26.65760617760618 24.70980694980695 23 18.48980694980695 31.02092664092664 25.827799227799225 24.66146718146718 24 18.674517374517375 26.183938223938224 36.90702702702703 18.234517374517374 25 17.848880308880307 27.8196138996139 33.472277992277995 20.8592277992278 26 17.447181467181466 34.95050193050193 26.94262548262548 20.65969111969112 27 16.92826254826255 34.669266409266406 28.28772200772201 20.114749034749035 28 15.692818532818533 31.175984555984552 34.79660231660232 18.334594594594595 29 15.456216216216218 26.659845559845557 33.9619305019305 23.92200772200772 30 17.492818532818532 33.21544401544402 29.63305019305019 19.65868725868726 31 24.68208494208494 30.16965250965251 25.292509652509654 19.855752895752897 32 25.724633204633207 29.796602316602318 26.575444015444017 17.903320463320462 33 25.43714285714286 28.95976833976834 24.05081081081081 21.552277992277993 34 18.277451737451738 30.75119691119691 27.022934362934365 23.948416988416987 35 18.753513513513514 27.485791505791507 29.16532818532819 24.595366795366797 36 26.443706563706566 26.481544401544397 26.380772200772203 20.693976833976834 37 18.943861003861002 32.18378378378378 28.10957528957529 20.762779922779924 38 19.549575289575287 32.05119691119691 26.58285714285714 21.81637065637066 39 19.44857142857143 31.72679536679537 27.463629343629343 21.361003861003862 40 22.93096525096525 27.699150579150576 26.34849420849421 23.021389961389964 41 17.504169884169883 25.006486486486484 29.19366795366795 28.295675675675675 42 20.71073359073359 25.87158301158301 26.568957528957526 26.84872586872587 43 20.445250965250967 26.090115830115828 28.29706563706564 25.167567567567566 44 19.360077220077223 28.820077220077224 28.711814671814672 23.10803088803089 45 18.384555984555984 32.94007722007722 25.66702702702703 23.00833976833977 46 21.68200772200772 30.242471042471042 27.156138996138996 20.91938223938224 47 20.3619305019305 26.98895752895753 27.394285714285715 25.254826254826256 48 20.102779922779924 25.016293436293434 32.134903474903474 22.746023166023164 49 20.887876447876447 23.992741312741312 31.44084942084942 23.67853281853282 50 18.985945945945947 30.19366795366795 29.237760617760618 21.582625482625485 51 17.765405405405403 29.058223938223936 27.913976833976832 25.262393822393825 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1882.0 1 2088.5 2 2295.0 3 7031.5 4 11768.0 5 8454.5 6 5141.0 7 5891.5 8 6642.0 9 7880.0 10 9118.0 11 9737.5 12 10357.0 13 10720.0 14 11083.0 15 10814.5 16 10546.0 17 10211.0 18 9876.0 19 9660.5 20 9445.0 21 9188.5 22 8932.0 23 9467.0 24 10002.0 25 11023.5 26 11811.0 27 11577.0 28 13806.0 29 16035.0 30 17023.5 31 18012.0 32 22077.5 33 26143.0 34 28017.0 35 29891.0 36 35526.0 37 41161.0 38 44724.0 39 48287.0 40 62733.5 41 77180.0 42 90200.0 43 103220.0 44 112250.0 45 121280.0 46 123557.0 47 125834.0 48 128255.0 49 130676.0 50 117738.5 51 104801.0 52 93639.5 53 82478.0 54 71530.5 55 60583.0 56 54841.0 57 49099.0 58 43663.0 59 38227.0 60 33914.5 61 29602.0 62 25545.5 63 21489.0 64 18188.5 65 14888.0 66 11982.5 67 9077.0 68 7627.0 69 6177.0 70 5038.5 71 3900.0 72 3174.5 73 2449.0 74 2118.5 75 1401.0 76 1014.0 77 749.0 78 484.0 79 409.0 80 334.0 81 215.0 82 96.0 83 77.5 84 59.0 85 39.0 86 19.0 87 11.0 88 3.0 89 2.0 90 1.0 91 2.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1295000.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.51818832735917 #Duplication Level Percentage of deduplicated Percentage of total 1 81.25031545159668 16.67109274093201 2 8.011561511068024 3.2876545576063174 3 2.7442925075587805 1.6892373148635538 4 1.3455017004462044 1.104290291381489 5 0.8053158326890276 0.8261810959058767 6 0.5235319580639848 0.6445156386568767 7 0.3550650280506246 0.5099703779801247 8 0.28076247333893734 0.4608589842578779 9 0.22124978099596918 0.408568020647604 >10 2.049396093559209 10.105922776579584 >50 1.0763384341896693 16.26772840722504 >100 1.3271542140034946 45.133469799730186 >500 0.00532840808604787 0.7275082700134725 >1k 0.003806005775748479 1.5491178136815429 >5k 3.806005775748479E-4 0.6138839105384186 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7861 0.607027027027027 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4052 0.31289575289575294 No Hit GAGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCT 2800 0.21621621621621623 Illumina PCR Primer Index 8 (95% over 21bp) AAGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCT 2092 0.16154440154440153 TruSeq Adapter, Index 19 (95% over 22bp) AAGAGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTT 1839 0.14200772200772202 No Hit GTCCCAGGGATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGCAGT 1733 0.1338223938223938 No Hit GAGAGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTT 1542 0.11907335907335907 No Hit CTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGCT 1507 0.11637065637065637 RNA PCR Primer, Index 40 (96% over 26bp) TAGAGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTT 1484 0.11459459459459459 RNA PCR Primer, Index 40 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGC 1411 0.10895752895752894 Illumina PCR Primer Index 8 (95% over 23bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1377 0.10633204633204633 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1322007722007722 0.0 2 0.0 0.0 0.0 0.4240926640926641 0.0 3 0.0 0.0 0.0 0.6149034749034749 0.0 4 0.0 0.0 0.0 1.3094208494208495 0.0 5 0.0 0.0 0.0 1.9341312741312742 0.0 6 0.0 0.0 0.0 2.9755984555984556 0.0 7 0.0 7.722007722007723E-5 0.0 3.3147490347490347 0.0 8 0.0 7.722007722007723E-5 0.0 4.265173745173745 0.0 9 0.0 7.722007722007723E-5 0.0 4.552586872586873 0.0 10 0.0 7.722007722007723E-5 0.0 5.09034749034749 0.0 11 0.0 7.722007722007723E-5 0.0 5.7877220077220075 0.0 12 0.0 7.722007722007723E-5 0.0 6.3566023166023164 0.0 13 0.0 7.722007722007723E-5 0.0 6.588494208494208 0.0 14 0.0 7.722007722007723E-5 0.0 6.6905791505791505 0.0 15 0.0 7.722007722007723E-5 0.0 6.824787644787645 0.0 16 0.0 7.722007722007723E-5 0.0 7.132277992277992 0.0 17 0.0 7.722007722007723E-5 0.0 7.465173745173745 0.0 18 0.0 7.722007722007723E-5 0.0 7.89027027027027 0.0 19 0.0 7.722007722007723E-5 0.0 8.102625482625482 0.0 20 0.0 7.722007722007723E-5 0.0 8.304787644787645 0.0 21 0.0 7.722007722007723E-5 0.0 8.552818532818533 0.0 22 0.0 7.722007722007723E-5 0.0 8.805096525096525 0.0 23 0.0 7.722007722007723E-5 0.0 9.081930501930502 0.0 24 0.0 7.722007722007723E-5 0.0 9.280463320463321 0.0 25 0.0 7.722007722007723E-5 0.0 9.453127413127413 0.0 26 0.0 7.722007722007723E-5 0.0 9.612586872586872 0.0 27 0.0 7.722007722007723E-5 0.0 9.761235521235522 0.0 28 0.0 7.722007722007723E-5 0.0 9.92918918918919 0.0 29 0.0 7.722007722007723E-5 0.0 10.114440154440155 0.0 30 0.0 7.722007722007723E-5 0.0 10.337297297297297 0.0 31 0.0 7.722007722007723E-5 0.0 10.550656370656371 0.0 32 0.0 7.722007722007723E-5 0.0 10.727413127413127 0.0 33 0.0 7.722007722007723E-5 0.0 10.913667953667954 0.0 34 0.0 7.722007722007723E-5 0.0 11.103706563706563 0.0 35 0.0 7.722007722007723E-5 0.0 11.32015444015444 0.0 36 0.0 7.722007722007723E-5 0.0 11.518996138996139 0.0 37 0.0 7.722007722007723E-5 0.0 11.723243243243243 0.0 38 0.0 7.722007722007723E-5 0.0 11.92023166023166 0.0 39 0.0 7.722007722007723E-5 0.0 12.135135135135135 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 45 3.8562575E-10 45.000004 1 CGTTCGA 45 3.8562575E-10 45.000004 33 AGTCGAT 45 3.8562575E-10 45.000004 42 AACGTTG 20 7.033619E-4 45.0 1 TTTAGCG 70 0.0 45.0 1 AACCGGT 20 7.033619E-4 45.0 45 TCCGCGA 50 2.1827873E-11 45.0 29 GTCGACG 25 3.8910803E-5 45.0 1 TACTTAC 20 7.033619E-4 45.0 44 ACGTTCA 20 7.033619E-4 45.0 15 TAGGTTA 20 7.033619E-4 45.0 38 CAGTTGA 40 6.8157533E-9 45.0 20 CATTGCG 20 7.033619E-4 45.0 1 ATTACCG 20 7.033619E-4 45.0 18 CGCGATA 25 3.8910803E-5 45.0 39 TCGGCCA 20 7.033619E-4 45.0 43 ATCGTCC 25 3.8910803E-5 45.0 37 CTGCGCG 20 7.033619E-4 45.0 1 TAGCACG 20 7.033619E-4 45.0 1 GTTACGA 25 3.8910803E-5 45.0 16 >>END_MODULE